LOCUS BC069023 1055 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3H, mRNA (cDNA clone MGC:78644 IMAGE:5441646),
complete cds.
ACCESSION BC069023
VERSION BC069023.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1055)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1055)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33356156.
FEATURES Location/Qualifiers
source 1..1055
/db_xref="H-InvDB:HIT000263206"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78644 IMAGE:5441646"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1055
/gene="APOBEC3H"
/gene_synonym="ARP10"
/gene_synonym="dJ742C19.2"
/db_xref="GeneID:164668"
CDS 113..661
/gene="APOBEC3H"
/gene_synonym="ARP10"
/gene_synonym="dJ742C19.2"
/codon_start=1
/product="apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3H"
/protein_id="AAH69023.1"
/db_xref="GeneID:164668"
/translation="MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTR
GYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHL
NLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPY
KMLEELDKNSRAIKRRLERIKS"
BASE COUNT 294 a 264 c 248 g 249 t
ORIGIN
1 ctgacctttt gtgacttttg ggagagctgc caaaagtgaa acttagtgcc tcagacaagc
61 aggggcaagt ctgctaagga agctgtggcc agaagcacag atcagaaaca cgatggctct
121 gttaacagcc gaaacattcc gcttacagtt taacaacaag cgccgcctca gaaggcctta
181 ctacccgagg aaggccctct tgtgttacca gctgacgccg cagaatggct ccacgcccac
241 gagaggctac tttgaaaaca agaaaaagtg ccatgcagaa atttgcttta ttaacgagat
301 caagtccatg ggactggacg aaacgcagtg ctaccaagtc acctgttacc tcacgtggag
361 cccctgctcc tcctgtgcct gggagctggt tgacttcatc aaggctcacg accatctgaa
421 cctgggcatc ttcgcctccc gcctgtacta ccactggtgc aagccccagc agaaggggct
481 gcggcttctg tgtggatccc aggtcccggt ggaggtcatg ggcttcccag agtttgctga
541 ctgctgggaa aactttgtgg accacgagaa accgctttcc ttcaacccct ataagatgtt
601 agaggagcta gataaaaaca gtcgagccat aaagcgacgg cttgagagga taaagtcctg
661 aagtgtggat gttttagaga atgacttaag aagtttgcag cttggacccg tatcccactc
721 attatcaaga agcaactcaa gatgactttc cctggggcat gtcagttgcc tcatagcctg
781 ctggtcctgt aagcaagcac taagctccac agtgccagtt ccttgcccca acctggcccc
841 atccaagtac agaagacctt cctttcctcc tttttccata ttgctttctg ttctaagtgg
901 gtgaataatt ttataattga aaaaataaag ataaagtctg taaatccagc cgggtacggt
961 ggctcacgcc tgtaatccta gcactttggg aggctgagat gctcggccaa taaatttcta
1021 ttgtttatga aaaaaaaaaa aaaaaaaaaa aaaaa
//