LOCUS       BC068992                1966 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae),
            mRNA (cDNA clone MGC:78385 IMAGE:6578102), complete cds.
ACCESSION   BC068992
VERSION     BC068992.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1966)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 54 Row: o Column: 22
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 30795253.
FEATURES             Location/Qualifiers
     source          1..1966
                     /db_xref="H-InvDB:HIT000263176"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:78385 IMAGE:6578102"
                     /tissue_type="Ovary, teratocarcinoma"
                     /clone_lib="NIH_MGC_109"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..1966
                     /gene="ATG4D"
                     /gene_synonym="APG4-D"
                     /db_xref="GeneID:84971"
                     /db_xref="HGNC:HGNC:20789"
     CDS             174..1598
                     /gene="ATG4D"
                     /gene_synonym="APG4-D"
                     /codon_start=1
                     /product="ATG4 autophagy related 4 homolog D (S.
                     cerevisiae)"
                     /protein_id="AAH68992.1"
                     /db_xref="GeneID:84971"
                     /db_xref="HGNC:HGNC:20789"
                     /translation="MNSVSPAAAQYRSSSPEDARRRPEARRPRGPRGPDPNGLGPSGA
                     SGPALGSPGAGPSEPDEVDKFKAKFLTAWNNVKYGWVVKSRTSFSKISSIHLCGRRYR
                     FEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLH
                     FLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSW
                     FADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVTRLVVYVSQD
                     CTVYKADVARLVARPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIM
                     GGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPS
                     CTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEGHAQDHSLDDLCSQLAQP
                     TLRLPRTGRLLRAKRPSSEDFVFL"
BASE COUNT          347 a          646 c          616 g          357 t
ORIGIN      
        1 agatggcgat ggctgcggta gcagcggcgg cggctgttgc ctggcccggt accctgggga
       61 cgggggccga gtagcgcctt ccccgggccc cgtgaaccgg ctgcgggtcg cccttggggg
      121 gcagcggccg cagcccccca cctgggccct cggtccgccc tcccggcgcg tccatgaact
      181 cagtgtcgcc ggccgccgcg cagtaccgga gcagcagccc ggaggacgcg cgccgccggc
      241 ccgaggcccg caggccgcgg ggtcccagag gcccagaccc caacggcctg gggccttccg
      301 gagccagcgg ccccgctctt ggctctcccg gggctggccc gagtgagccg gacgaagtgg
      361 acaagttcaa ggccaagttc ctgacagcct ggaacaacgt caagtacggt tgggtggtta
      421 aaagccggac cagctttagc aagatctcca gcatccacct ctgtggccgc cgctaccgtt
      481 tcgagggcga gggtgacata cagcgtttcc agcgggactt tgtgtcccgc ctgtggctca
      541 cataccgccg ggacttcccg ccccttcctg ggggctgcct gacctcggac tgtggctggg
      601 ggtgcatgtt acgcagcggc cagatgatgc tggcacaggg ccttctgctg catttcctgc
      661 ccagagactg gacatgggcc gagggcatgg gcctgggccc ccctgagctg tcagggtcag
      721 cctctcccag ccggtaccat gggcctgccc gctggatgcc cccacgctgg gcccagggtg
      781 cccctgagct ggagcaggaa cgccggcacc ggcagattgt gtcctggttc gccgaccacc
      841 cccgggcccc ctttggccta caccggctgg tggagcttgg gcagagctca ggcaagaagg
      901 caggtgactg gtatgggcca tcgctagtgg cacacatcct caggaaagcc gtggagagct
      961 gctccgacgt cacccgcctg gtggtgtacg tttctcagga ctgcacagtg tacaaggcgg
     1021 atgtggcacg cctggtggcc aggccagacc ccacagccga gtggaagtct gtggtcatcc
     1081 tggtgcccgt gcgactgggt ggcgagactc tcaaccccgt gtatgtgccc tgcgtgaagg
     1141 aactcctgcg ttgcgagctg tgcctgggca tcatgggtgg gaaaccgcga cactcactgt
     1201 acttcattgg ctaccaagat gacttcctgc tgtacctgga ccctcactac tgccagccca
     1261 ctgtggatgt cagccaggcc gacttccccc tggagtcctt ccactgcacc tcgccccgca
     1321 agatggcctt tgccaagatg gacccaagct gtaccgtggg cttctatgct ggagacagga
     1381 aggagtttga gacactctgc tcagagctga ccagggtcct cagctcctcc tcagccacag
     1441 agcggtaccc catgttcacc ctggccgagg gccatgctca ggaccacagc ctggacgacc
     1501 tctgctccca gctcgcccag cccacactcc ggctccctcg cacagggcgg ctcctcaggg
     1561 ccaaacgccc cagctctgag gactttgtgt ttttataaag ggaggggatg aggggaaaga
     1621 tacaacacta tttatttttt tatttatgtc atgtcgggtg tgggatcttg agctctggca
     1681 gtgatgatgg tacttcctgt tgtcagcccc tcaagcccag ctgcaaccag tctggggcca
     1741 ttcagccagg gacagagccc acagagccca tacacctgtc tcccaccagc ggggccctcc
     1801 tggcagggta gggaaggagg accccgggca cccccctcag ggcctgactc acgtactgta
     1861 gtttgcactg gacgcccggg ccctccctgt cccaaagccc ccttggggga actgtggctg
     1921 ctgggggcca ataaagctgt gtaacttgaa aaaaaaaaaa aaaaaa
//