LOCUS BC068992 1966 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae), mRNA (cDNA clone MGC:78385 IMAGE:6578102), complete cds. ACCESSION BC068992 VERSION BC068992.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1966) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1966) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 54 Row: o Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 30795253. FEATURES Location/Qualifiers source 1..1966 /db_xref="H-InvDB:HIT000263176" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:78385 IMAGE:6578102" /tissue_type="Ovary, teratocarcinoma" /clone_lib="NIH_MGC_109" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1966 /gene="ATG4D" /gene_synonym="APG4-D" /db_xref="GeneID:84971" /db_xref="HGNC:HGNC:20789" CDS 174..1598 /gene="ATG4D" /gene_synonym="APG4-D" /codon_start=1 /product="ATG4 autophagy related 4 homolog D (S. cerevisiae)" /protein_id="AAH68992.1" /db_xref="GeneID:84971" /db_xref="HGNC:HGNC:20789" /translation="MNSVSPAAAQYRSSSPEDARRRPEARRPRGPRGPDPNGLGPSGA SGPALGSPGAGPSEPDEVDKFKAKFLTAWNNVKYGWVVKSRTSFSKISSIHLCGRRYR FEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLH FLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSW FADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVTRLVVYVSQD CTVYKADVARLVARPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIM GGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPS CTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEGHAQDHSLDDLCSQLAQP TLRLPRTGRLLRAKRPSSEDFVFL" BASE COUNT 347 a 646 c 616 g 357 t ORIGIN 1 agatggcgat ggctgcggta gcagcggcgg cggctgttgc ctggcccggt accctgggga 61 cgggggccga gtagcgcctt ccccgggccc cgtgaaccgg ctgcgggtcg cccttggggg 121 gcagcggccg cagcccccca cctgggccct cggtccgccc tcccggcgcg tccatgaact 181 cagtgtcgcc ggccgccgcg cagtaccgga gcagcagccc ggaggacgcg cgccgccggc 241 ccgaggcccg caggccgcgg ggtcccagag gcccagaccc caacggcctg gggccttccg 301 gagccagcgg ccccgctctt ggctctcccg gggctggccc gagtgagccg gacgaagtgg 361 acaagttcaa ggccaagttc ctgacagcct ggaacaacgt caagtacggt tgggtggtta 421 aaagccggac cagctttagc aagatctcca gcatccacct ctgtggccgc cgctaccgtt 481 tcgagggcga gggtgacata cagcgtttcc agcgggactt tgtgtcccgc ctgtggctca 541 cataccgccg ggacttcccg ccccttcctg ggggctgcct gacctcggac tgtggctggg 601 ggtgcatgtt acgcagcggc cagatgatgc tggcacaggg ccttctgctg catttcctgc 661 ccagagactg gacatgggcc gagggcatgg gcctgggccc ccctgagctg tcagggtcag 721 cctctcccag ccggtaccat gggcctgccc gctggatgcc cccacgctgg gcccagggtg 781 cccctgagct ggagcaggaa cgccggcacc ggcagattgt gtcctggttc gccgaccacc 841 cccgggcccc ctttggccta caccggctgg tggagcttgg gcagagctca ggcaagaagg 901 caggtgactg gtatgggcca tcgctagtgg cacacatcct caggaaagcc gtggagagct 961 gctccgacgt cacccgcctg gtggtgtacg tttctcagga ctgcacagtg tacaaggcgg 1021 atgtggcacg cctggtggcc aggccagacc ccacagccga gtggaagtct gtggtcatcc 1081 tggtgcccgt gcgactgggt ggcgagactc tcaaccccgt gtatgtgccc tgcgtgaagg 1141 aactcctgcg ttgcgagctg tgcctgggca tcatgggtgg gaaaccgcga cactcactgt 1201 acttcattgg ctaccaagat gacttcctgc tgtacctgga ccctcactac tgccagccca 1261 ctgtggatgt cagccaggcc gacttccccc tggagtcctt ccactgcacc tcgccccgca 1321 agatggcctt tgccaagatg gacccaagct gtaccgtggg cttctatgct ggagacagga 1381 aggagtttga gacactctgc tcagagctga ccagggtcct cagctcctcc tcagccacag 1441 agcggtaccc catgttcacc ctggccgagg gccatgctca ggaccacagc ctggacgacc 1501 tctgctccca gctcgcccag cccacactcc ggctccctcg cacagggcgg ctcctcaggg 1561 ccaaacgccc cagctctgag gactttgtgt ttttataaag ggaggggatg aggggaaaga 1621 tacaacacta tttatttttt tatttatgtc atgtcgggtg tgggatcttg agctctggca 1681 gtgatgatgg tacttcctgt tgtcagcccc tcaagcccag ctgcaaccag tctggggcca 1741 ttcagccagg gacagagccc acagagccca tacacctgtc tcccaccagc ggggccctcc 1801 tggcagggta gggaaggagg accccgggca cccccctcag ggcctgactc acgtactgta 1861 gtttgcactg gacgcccggg ccctccctgt cccaaagccc ccttggggga actgtggctg 1921 ctgggggcca ataaagctgt gtaacttgaa aaaaaaaaaa aaaaaa //