LOCUS BC068606 2893 bp mRNA linear HTC 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone IMAGE:5295354), with apparent retained intron.
ACCESSION BC068606
VERSION BC068606.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2893)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2893)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: c Column: 19
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2893
/db_xref="H-InvDB:HIT000263161"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5295354"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 578 a 757 c 833 g 725 t
ORIGIN
1 gctggagagg acccggtgat gagaaaagga ggaggatgga aaaagagtgg aaaagaaggg
61 aggggaggaa aagggcggag cccgtggcct taaataggat ggtgatgcgc cagagatgcg
121 cggtttgagt gttcagagat tggttgtgct actgaaggcg gcggacgtgg gacccccggt
181 tccgtctcgg gaagtaactc atctgccccc tctttgaaca cctccgctca cgagcgcagc
241 acgtggaaac cgtcagtgat ttgtgtctgc aacgtgtgtg agagaatgga gattcaaaca
301 ggatctaccc cctctgcagc ccttcaagaa gaggtatgat tgctaccact tttccccaca
361 aagtgacgaa aggaaacagc gacggaagcg caaccgaacc ctggaattgg tgtctcgact
421 ggtccattcc cggcccaccc ccattaaccg gctcgagcca ctcccaggac gaagtcaagg
481 cctcggaagg cgactacaac tcccagcagg tcgagcagct ccgcccgcgc tgattctcca
541 ttggccttcc gggggtgggg attagatggg aggtggccgt ggggctgcgg ccgggatttg
601 tcccctcttc ggcttccgta gaggaagtgg cgcggacctt catttggggt ttcggttccc
661 ccccttcccc ttccccgggg tctgggggtg acattgcacc gcgcccctcg tggggtcgcg
721 ttgccacccc acgcggactc cccagctggc gcgcccctcc catttgcctg tcctggtcag
781 gcccccaccc cccttcccac ctgaccagcc atgggggctg cggtgttttt cggctgcact
841 ttcgtcgcgt tcggcccggc cttcgcgctt ttcttgatca ctgtggctgg ggacccgctt
901 cgcgttatca tcctggtcgc agggtgagta gagggcccgg gagacgcggg agagcgtcga
961 agagagaggt gcggaagggg ctggaggaac tggggcaagc ctgggagcct gaattgggga
1021 cgataagtcg gaggtgaagt ttgggcggag gtgaggggtt gggtctggga gatttgtcct
1081 ttcccgcagt tggtttccac cttccaagga tctcacagat tcctcctata ttcctcccag
1141 cgacgtcaga gaaggcccaa ggccgagact cgtgaggggg ctgtgctgac ctaggcaggc
1201 cgagtcaggt gccttagggg aggatccagg aacggatacc tcgcccttcc gtgctcgcac
1261 actctggctg tcatcgctct gaagactctt taattagatt tctccccttt ccagtgcgtt
1321 cacttttcta cagatgagtc tcttggtgga gacagttacc ctacctggtc catgtctccc
1381 taaccatccg gaaggctaac ttccactttt caagcagctt tggctggttt ccctccttga
1441 tttctctggc tcccactact attgcttgtc tcactgcccc tgtcttttct cagggcattt
1501 ttctggctgg tctccctgct cctggcctct gtggtctggt tcatcttggt ccatgtgacc
1561 gaccggtcag atgcccggct ccagtacggc ctcctgattt ttggtgctgc tgtctctgtc
1621 cttctacagg aggtgttccg ctttgcctac tacaagctgc ttaagaaggc agatgagggg
1681 ttagcatcgc tgagtgagga cggaagatca cccatctcca tccgccagat ggcctatgtt
1741 tctggtctct ccttcggtat catcagtggt gtcttctctg ttatcaatat tttggctgat
1801 gcacttgggc caggtgtggt tgggatccat ggagactcac cctattactt cctgacttca
1861 gcctttctga cagcagccat tatcctgctc catacctttt ggggagttgt gttctttgat
1921 gcctgtgaga ggagacggta ctgggctttg ggcctggtgg ttgggagtca cctactgaca
1981 tcgggactga cattcctgaa cccctggtat gaggccagcc tgctgcccat ctatgcagtc
2041 actgtttcca tggggctctg ggccttcatc acagctggag ggtccctccg aagtattcag
2101 cgcagcctct tgtgccgacg gcaggaggac agtcgggtga tggtgtattc tgccctgcgc
2161 atcccacccg aggactgagg gaacctaggg gggacccctg ggcctggggt gccctcctga
2221 tgtcctcgcc ctgtatttct ccatctccag ttctggacag tgcaggttgc caagaaaagg
2281 gacctagttt agccattgcc ctggagatga aattaatgga ggctcaagga tagatgagct
2341 ctgagtttct cagtactccc tcaagactgg acatcttggt ctttttctca ggcctgaggg
2401 ggaaccattt ttggtgtgat aaatacccta aactgccttt ttttcttttt tgaggtgggg
2461 ggagggagga ggtatattgg aactcttcta acctccttgg gctatatttt ctctcctcga
2521 gttgctcctc atggctgggc tcatttcggt ccctttctcc ttggtcccag accttggggg
2581 aaaggaagga agtgcatgtt tgggaactgg cattactgga actaatggtt ttaacctcct
2641 taaccaccag catccctcct ctccccaagg tgaagtggag ggtgctgtgg tgagctggcc
2701 actccagagc tgcagtgcca ctggaggagt cagactacca tgacatcgta gggaaggagg
2761 ggagattttt ttgtagtttt taattggggt gtgggagggg cggggaggtt ttctataaac
2821 tgtatcattt tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaaaaa aaa
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