LOCUS BC068585 3206 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens HERV-FRD provirus ancestral Env polyprotein, mRNA
(cDNA clone MGC:87585 IMAGE:30346522), complete cds.
ACCESSION BC068585
VERSION BC068585.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3206)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3206)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: o Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46485772.
FEATURES Location/Qualifiers
source 1..3206
/db_xref="H-InvDB:HIT000263141"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87585 IMAGE:30346522"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3206
/gene="HERV-FRD"
/gene_synonym="FLJ41944"
/gene_synonym="GLLL6191"
/gene_synonym="MGC87585"
/gene_synonym="UNQ6191"
/db_xref="GeneID:405754"
CDS 371..1987
/gene="HERV-FRD"
/gene_synonym="FLJ41944"
/gene_synonym="GLLL6191"
/gene_synonym="MGC87585"
/gene_synonym="UNQ6191"
/codon_start=1
/product="HERV-FRD provirus ancestral Env polyprotein"
/protein_id="AAH68585.1"
/db_xref="GeneID:405754"
/translation="MGLLLLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCW
LCTSSSTETPGTAYPASPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPD
IRQKPPIFGPIFTNINLMGIAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQT
YTHNQFRHQPRFPKPPNITFPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADYNQCLQI
SNLSSTAEWVLLDQTRNSLFWENKTKGANQSQTPCVQVLAGMTIATSYLGISAVSEFF
GTSLTPLFHFHISTCLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLS
LPIPIYGNSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNI
DTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLALDEKCCFWVNQSGKVQD
NIRQLLNQASSLRERATQGWLNWEGTWKWFSWVLPLTGPLVSLLLLLLFGPCLLNLIT
QFVSSRLQAIKLQTNLSAGRHPRNIQESPF"
BASE COUNT 901 a 877 c 632 g 796 t
ORIGIN
1 ggcacttgga tctctcaaat ggtgcagtga ctcggatacc ttccctagtg ccattacagt
61 actggagact gccagctaga tccatcacac ccaagtgaag ctgtggaaaa gcccttaaac
121 tccagagcca gaaccagcaa cctcagctcc ggaatacact tgcaaggcac tggaagatct
181 aaaattcctc tttaaacaaa aagataagta atgccccacc aacatccttt cacctcaaag
241 taaggtgatc ccaatactag aaattttact ggcaattgct ctgattgtta tcactatttt
301 aaccctaact tgtacaccac caggagttcc attggcagct cgttttgtga ccagtttctc
361 ttaggtcacc atgggcctgc tcctgctggt tctcattctc acgccttcac tagcagccta
421 ccgccatcct gatttcccgt tattggaaaa agctcagcaa ctgctccaaa gtacaggatc
481 cccttactcc accaattgct ggttatgtac tagctcttcc actgaaacac cagggacagc
541 ttatccagcc tcgcccagag aatggacaag catagaggcg gaattacata tttcctatcg
601 atgggaccct aatctgaaag gactgatgag gcctgcaaat agtcttcttt caacagtaaa
661 gcaagatttc cctgatatcc gccagaaacc tcccattttc ggacccatct ttactaatat
721 caacctaatg ggaatagccc ctatttgtgt tatggccaaa aggaaaaatg gaacaaatgt
781 aggcactctt ccaagtacag tctgtaatgt tactttcact gtagattcta accaacagac
841 ttaccaaaca tacacccaca accaattccg ccatcaacca agattcccca aacctccaaa
901 tattactttt cctcagggaa ctttgctaga taaatccagc cggttttgcc agggacgccc
961 aagctcatgc agtactcgaa acttctggtt ccggcctgct gattataacc aatgtctgca
1021 aatttccaac ctcagctcta cagcggaatg ggttctattg gaccaaactc gaaattctct
1081 tttttgggaa aataaaacca agggagctaa ccagagccaa acaccctgcg tccaagtctt
1141 agcaggcatg actatagcca ccagctacct gggcatatca gcagtctcag aattttttgg
1201 aacctccctc acccccttat ttcatttcca tatctctaca tgccttaaaa ctcaaggagc
1261 cttttatatt tgtggccagt cgattcacca atgcctcccc agtaactgga ctggaacttg
1321 taccataggc tatgtaaccc cagacatctt catagcccct ggcaatctct ctcttccaat
1381 accaatctat gggaattccc cgttgcccag ggtgaggagg gcaatccatt tcattcccct
1441 tctcgcggga ctcggcattc tagctggtac gggaaccgga attgctggaa tcacaaaagc
1501 ttccctcacc tatagccagc tctcaaagga aatagccaac aacattgaca ccatggctaa
1561 agccttaacg accatgcaag aacaaatcga ctctttagca gccgtagtcc ttcaaaatcg
1621 tcgaggacta gacatgttaa cggcagcaca gggaggaatt tgtttggcct tagatgaaaa
1681 atgttgcttt tgggtaaatc aatcaggaaa agtacaagac aacatcagac aactcctaaa
1741 tcaagcctcc agtttacggg aacgagccac tcagggttgg ttaaattggg aaggaacttg
1801 gaaatggttc tcttgggttc ttccccttac aggcccactt gttagtctcc tacttttgct
1861 cctttttggt ccatgtctcc taaatctaat aacccaattt gtctcctctc gccttcaggc
1921 cataaagctc cagacgaatc tcagtgcagg acgccatcct cgcaatattc aagagtcacc
1981 cttctaagga ggacccctag actgctcgct agtggaacac gacagaggcg aaatcctgcc
2041 ccgtctcccg tggacctggc tggatatggt ttttgccaat ccacagagcc atcctgccct
2101 gacagctagc aagaggccaa gacccacaga acaaccacta cagcccctct gtcagcagga
2161 agcagttaaa gaagactgac cttcgtccat tttcccagat aattgggtct tggactcttg
2221 aggtggggaa atgttggagc aggtagctag tcagacatga gcagggcagg ggagggcccc
2281 ctcaccagga atgtcaggca accatcaggt gatggtcagg cagttgttaa gctgtgtctc
2341 taacataata atgagtggca gctggcgcca gggaactatg gcctcccaat agataggaaa
2401 cacctgaagc tggtgatcag ccgcttcctg ataagatctc aggagttggg tgcgcaggct
2461 caagcatgca ccctaagagg caaaatagtg gcatttaact catatatgac cttcctttag
2521 gaaggcttga ctggtaaggg aaaaactcct ccagtgaaca cgtgcacaac ttcagtaaaa
2581 acactgcaca tgcgtcccct cccaagtgct ggcaggccac tgtgcatgca gacagcccgc
2641 cccaaagaaa aatcagagga ggagaaatgg aaaccccgga aaaatgccaa tgtataaaac
2701 cccaagtcaa gggcctacca aggcaattgg atctctcaag tcacccgctt ggctctcttc
2761 aagtgcactt tgcttccttt tgttcttgct ctaaaacttt tactcctgct ctaaaacttg
2821 ccttggacta tcatgctacc ttacgcctcc cgggccaaat tccctcctct cctccggggg
2881 gcaaggatgg agtctgctgc agacccattg gatttgctgc tggtaacagt tccaccattt
2941 aggttccagc accaagcaaa ctaacacccg actcagtgta aacagccaaa caagcttaac
3001 caattagaaa ccaccatcta acctctaact aggtcctttc aactttaacc aagtattttc
3061 tttgtcttgc ttctgtggga accttataaa attttccccc ttgtacctct gtagtagaga
3121 cccagttgct tgcagtttgg ccctgcctgt tcatgaatca cccttgctca aataaactct
3181 ctaaaatgct aaaaaaaaaa aaaaaa
//