LOCUS BC068580 3136 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens DENN/MADD domain containing 5B, mRNA (cDNA clone
MGC:87563 IMAGE:5265807), complete cds.
ACCESSION BC068580
VERSION BC068580.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3136)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3136)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: l Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32307180.
FEATURES Location/Qualifiers
source 1..3136
/db_xref="H-InvDB:HIT000263136"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87563 IMAGE:5265807"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3136
/gene="DENND5B"
/db_xref="GeneID:160518"
/db_xref="HGNC:HGNC:28338"
CDS 178..2394
/gene="DENND5B"
/codon_start=1
/product="DENND5B protein"
/protein_id="AAH68580.1"
/db_xref="GeneID:160518"
/db_xref="HGNC:HGNC:28338"
/translation="MSGSCAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAVL
YQWLEADRHGKSQGAANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNML
CMPKGLSFRTQTDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQM
HNAEHYSSVYASSSCSMDSLASSLDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLIT
PLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPV
ICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEG
ITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFV
DIDNHFIELPEEFPQFPNKVDFIQELSEVLVQFGIPPEGSLHCSESTSKLKNMVLKDL
VNDKKDGNVCTNNISMYELLKGNETIARLQALAKRTGVAVEKMDLSASLGEKDKDLKL
HCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKA
SFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDTRIDKIRLYNVR
APTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQS
DVLATGPTSNNRWVSRSATAQRRKERLRQHSEHVGLDNDLREVCGLPSWGASQQAP"
BASE COUNT 862 a 719 c 692 g 863 t
ORIGIN
1 gcttcccccg cgccgagcga ggaggcaagc tgcggcggcg agaggcggct gcgcggccat
61 gggcgcgcca gtgtcgccct agggcgggcg cacagaccac agccggagcg gtggtggcag
121 cctccgcaga aagccttccc gggcggcggc ggcggcccct ggagcagcgc ggccgggatg
181 agcgggagct gcgcggcgcc cggcccgggc tcgggctcct ccccggccgc ctgccgcttc
241 gcgcactact tcgtgctgtg cgggatcgac gcggacagcg ggctggagcc tgacgagctg
301 gcggttttgt accaatggct agaagcagat cgtcatggca agagccaagg tgctgcaaat
361 acgacttcag gcgaaaattt tgaccagagt cctttgagaa gaacattcaa atccaaagtt
421 ctcgcccact atcctcagaa tatagaatgg aacccttttg atcaagatgc ggtgaacatg
481 ttgtgcatgc ctaaagggct atctttcagg acacaaacgg acaataaaga cccccagttt
541 cactcattta taattaccag ggaagatggt tctcgcacct atggttttgt tctcactttt
601 tatgaagaag ttacaagtaa gcaaatctgc acagcaatgc agacacttta ccagatgcac
661 aacgctgagc attacagcag tgtgtatgct tcatcttcct gcagtatgga ctcattggca
721 agtagtcttg atgaaggaga tacaacttcc cttttgaaac tccagcgata caactcctat
781 gatattagca gagacaccct gtatgtttca aaaagtatat gcttgatcac accgttacca
841 ttcatgcagg cctgcaagaa attccttatc cagctttaca aggctgttac ctcacagcag
901 ccaccaccct tgccacttga aagctatatc cacaatattc tttatgaagt accccttcca
961 cctccaggga ggtcactgaa attttatggt gtttatgaac ctgtcatctg ccagaggcct
1021 gggcccagtg aactccccct ctctgattac ccccttcggg aggcatttga gctcctggga
1081 ttagagaacc tggtgcaggt gtttacctgt gttcttttag agatgcaaat ccttctctac
1141 tcacaagatt atcaacgcct gatgactgtg gcagaaggca tcaccacact tttgttccca
1201 tttcaatggc aacatgttta tgtgcccatt ctacctgctt ctctgctaca ttttcttgat
1261 gctcctgtcc cttatctgat gggccttcag tcaaaagaag gaactgaccg ttctaaacta
1321 gaacttcctc aagaggctaa tttgtgtttt gtggacattg acaaccattt tattgagttg
1381 cctgaagaat ttccacagtt ccccaataaa gtggatttta tccaagaact ctctgaggtt
1441 cttgttcaat ttgggatccc tcctgagggc agcctacatt gcagtgagag taccagcaaa
1501 ctgaagaata tggttctgaa agacttggtc aatgacaaaa aggacggcaa tgtctgtact
1561 aataacatca gcatgtatga gttactgaag ggcaatgaaa ccatagcccg cttgcaggct
1621 ctggccaagc gtactggtgt ggctgtggaa aaaatggacc tctctgcttc tctgggtgaa
1681 aaagacaagg atttaaaact gcattgtgaa gaggcagaac taagggacta ccagctcaat
1741 gtacagctcc gagaggtctt tgctaaccgt tttacacaga tgtttgcaga ttacgaagca
1801 tttgtcattc agactgccca ggacatggaa tcctggctga ccaaccggga acagatgcag
1861 aactttgaca aagcttcctt tctgtctgac cagcctgagc cttacctgcc atttctttca
1921 cgcttcattg aaacacagat gtttgccacc tttattgata ataaaattat gtctcagtgg
1981 gaagagaaag atcctttgct tcgggtcttt gacactcgga ttgataagat aaggctgtat
2041 aatgtaaggg cacccacctt gcggacatct atatatcaga aatgcagcac tttaaaagaa
2101 gcagcccaat caattgagca gagactgatg aaaatggatc acactgcaat ccacccacat
2161 ctacttgata tgaaaattgg tcaaggcaaa tatgagcagg ggttctttcc aaagttacag
2221 tccgatgtct tggcaacagg accaaccagt aacaatcgct gggtaagtcg gagtgccact
2281 gcacagcgca ggaaagaacg ccttcgccag cattctgagc atgttgggct ggacaacgac
2341 ttgagggagg tatgtggtct accttcctgg ggtgcctcac agcaagcgcc atgaactagg
2401 cttattcctt ccagcagatg tcattgtgta aattcttaat gttctttaaa aaaaaaactg
2461 tttagttata gtttaaaata ttaatccttt tgtacggaca tatagcagaa aacacccttt
2521 tttccatttt tgtaatttca agacatctat aataaggctc taaaacaagt ctttctgtgt
2581 attacatcaa gtaaagatca agttgaggat aaatttttag ttactatgtc tcctatagga
2641 gaaaaattgt ctgcatgaga agcctagaca tttctaagtt tcaagcataa ttataaggag
2701 tagtgtgatg tacttgccta tgctttgttc ttggcttgct ggcaccagtt tttttcttga
2761 atctctaaat ctactttata tttttgaaag tgttttaaaa ctatttttaa attaagatcc
2821 ttacactttt atttgtactc tttgaaaata agaccataat tatacaacaa gtaagttttg
2881 atttttttct gtgtgaaatc tgcatatata tagtgtcttg ctatgttgcc caggtcttga
2941 actcctgggc tcaagcagtg ctcctgcctc agcctcccaa agtattggga ttacaggtgt
3001 gagctgccat gcccagcctg attgtttcgt ttcttatgat caaaagagaa atgcaatcag
3061 aagacttgtt aactgttttc tagtatcaaa tttgtaaaaa taaagcagaa aacatcatcc
3121 caaaaaaaaa aaaaaa
//