LOCUS BC068537 2742 bp mRNA linear HUM 25-JUN-2004 DEFINITION Homo sapiens serine palmitoyltransferase, long chain base subunit 1, mRNA (cDNA clone MGC:87384 IMAGE:5259635), complete cds. ACCESSION BC068537 VERSION BC068537.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2742) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2742) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 167 Row: i Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5454083. FEATURES Location/Qualifiers source 1..2742 /db_xref="H-InvDB:HIT000263094" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87384 IMAGE:5259635" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescript" gene 1..2742 /gene="SPTLC1" /gene_synonym="HSAN" /gene_synonym="HSAN1" /gene_synonym="HSN1" /gene_synonym="LBC1" /gene_synonym="LCB1" /gene_synonym="MGC14645" /gene_synonym="SPT1" /gene_synonym="SPTI" /db_xref="GeneID:10558" /db_xref="MIM:605712" CDS 9..1550 /gene="SPTLC1" /gene_synonym="HSAN" /gene_synonym="HSAN1" /gene_synonym="HSN1" /gene_synonym="LBC1" /gene_synonym="LCB1" /gene_synonym="MGC14645" /gene_synonym="SPT1" /gene_synonym="SPTI" /codon_start=1 /product="SPTLC1 protein" /protein_id="AAH68537.1" /db_xref="GeneID:10558" /db_xref="MIM:605712" /translation="MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTY KLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECIN FASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEE AIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLE RLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEES LSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQG YCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSP AFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTRARYLEKEEKCLPPPRGRTGESC VHHQGGSPGRPALGRVPGPWPPATQHAERTQDSRWPWSGLKESKNMWIFDRIVTKWCQ YGPIV" BASE COUNT 818 a 505 c 556 g 863 t ORIGIN 1 ggctaactat ggcgaccgcc acggagcagt gggttctggt ggagatggta caggcgcttt 61 acgaggctcc tgcttaccat cttattttgg aagggattct gatcctctgg ataatcagac 121 ttcttttctc taagacttac aaattacaag aacgatctga tcttacagtc aaggaaaaag 181 aagaactgat tgaagagtgg caaccagaac ctcttgttcc tcctgtccca aaagaccatc 241 ctgctctcaa ctacaacatc gtttcaggcc ctccaagcca caaaactgtg gtgaatggaa 301 aagaatgtat aaacttcgcc tcatttaatt ttcttggatt gttggataac cctagggtta 361 aggcagcagc tttagcatct ctaaagaagt atggcgtggg gacttgtgga cccagaggat 421 tttatggcac atttgatgtt catttggatt tggaagaccg cctggcaaaa tttatgaaga 481 cagaagaagc cattatatac tcatatggat ttgccaccat agccagtgct attcctgctt 541 actctaaaag aggggacatt gtttttgtag atagagctgc ctgctttgct attcagaaag 601 gattacaggc atcccgtagt gacattaagt tatttaagca taatgacatg gctgacctcg 661 agcgactact aaaagaacaa gagatcgaag atcaaaagaa tcctcgcaag gctcgtgtaa 721 ctcggcgttt cattgtagta gaaggattgt atatgaatac tggaactatt tgtcctcttc 781 cagaattggt taagttaaaa tacaaataca aagcaagaat cttcctggag gaaagccttt 841 catttggagt cctaggagag catggccgag gagtcactga acactatgga atcaatattg 901 atgatattga tcttatcagt gccaacatgg agaatgcact tgcttctatt ggaggtttct 961 gctgtggcag gtcttttgta attgaccatc agcgactttc cggccaggga tactgctttt 1021 cagcttcgtt acctcccctg ttagctgctg cagcaattga ggccctcaac atcatggaag 1081 agaatccagg tatttttgca gtgttgaagg aaaagtgcgg acaaattcat aaagctttac 1141 aaggcatttc tggattaaaa gtggtggggg agtccctttc tccagccttt cacctacaac 1201 tggaagagag cactgggtct cgcgagcaag atgtcagact gcttcaggaa attgtagatc 1261 aatgcatgaa cagaagtatt gcattaactc gggcgcgcta cttggagaaa gaagagaagt 1321 gtctccctcc tcccagagga agaactggag agagctgcgt ccaccatcaa ggaggtagcc 1381 caggccgtcc tgctctaggc agagtcccgg gaccatggcc tcctgccaca caacacgcag 1441 agaggactca agactcccgc tggccatgga gtggcctgaa agagagcaag aacatgtgga 1501 tctttgatag gattgttacc aaatggtgtc agtatggacc aattgtgtga ccatgagaag 1561 gatgcttatt ttttttaaaa agaaaacaca tctaaaagcc caggaactga tttttttaag 1621 aggaaaacta atgacagtgt ataactgatg tttaaattgt gcatttagta ctatttaaat 1681 gttttcttat actagtattt tatattcttt tgttgtcgtt taaaactgga gcttcagtgt 1741 ctcttccctc cctctaatag taatggttca gtaagcactc cttaactcct tagtatttca 1801 tagaaaaatg actgcaacat taaagctaag aggaacactt caacatatgt ggtacaaatt 1861 tatattgaag atctaaataa accacgtatt ttccagtctt cgttgtgtga agctaaatgg 1921 tggctaaaag gaacactttt tgtgtgatta ttataaactt tgcattgtat ttgaatctta 1981 gaacttttgt acacactaaa tattgatgtc acaccatttc taatctgagc atccttagcc 2041 agagaatatt cattatactt cctaagtgag caataattta aatcagaagc tattttattt 2101 taatgtaatt aacctttctt tacatttctt atgtgttcac ctctaatctg ttttaggaag 2161 agagttggtt attatgttga tcccataata taaatcatat cctttatatt ttagaatatc 2221 tcaaatgtat tccttttttg tatggtgggt ttgcctaggg acgtgtaact acaggctttt 2281 actaagccaa ggaaaaagag aatttttctt ttcatcttac aaattccaga tatctacaaa 2341 agatgtgaaa gcactaaaaa taccattttt aagcagtact ttacctgttt tttctttagc 2401 aaaccaggtt atgtggtgta aaggtttgtt atacgtgcca caatatagca tataaatatt 2461 atgccatcat tccttctctt gttaaaggta gaagaataaa attgtgattt ttataacctg 2521 tgcttattac tcaaatggtc ttcaacatct ttttaaacaa cacatacttt ttgaatgttc 2581 agtttctatt ttgcttgagg tattttgtac atatgtgcct tgtgattgct gctgctttaa 2641 aggataaagt actctttggg ggatgagtct ggtttgtttt gttttatttt ttaatgaaat 2701 aaacctatat tcctgattat tagtccaaaa aaaaaaaaaa aa //