LOCUS       BC068537                2742 bp    mRNA    linear   HUM 25-JUN-2004
DEFINITION  Homo sapiens serine palmitoyltransferase, long chain base subunit
            1, mRNA (cDNA clone MGC:87384 IMAGE:5259635), complete cds.
ACCESSION   BC068537
VERSION     BC068537.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2742)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 167 Row: i Column: 18
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 5454083.
FEATURES             Location/Qualifiers
     source          1..2742
                     /db_xref="H-InvDB:HIT000263094"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:87384 IMAGE:5259635"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_95"
                     /lab_host="DH10B"
                     /note="Vector: pBluescript"
     gene            1..2742
                     /gene="SPTLC1"
                     /gene_synonym="HSAN"
                     /gene_synonym="HSAN1"
                     /gene_synonym="HSN1"
                     /gene_synonym="LBC1"
                     /gene_synonym="LCB1"
                     /gene_synonym="MGC14645"
                     /gene_synonym="SPT1"
                     /gene_synonym="SPTI"
                     /db_xref="GeneID:10558"
                     /db_xref="MIM:605712"
     CDS             9..1550
                     /gene="SPTLC1"
                     /gene_synonym="HSAN"
                     /gene_synonym="HSAN1"
                     /gene_synonym="HSN1"
                     /gene_synonym="LBC1"
                     /gene_synonym="LCB1"
                     /gene_synonym="MGC14645"
                     /gene_synonym="SPT1"
                     /gene_synonym="SPTI"
                     /codon_start=1
                     /product="SPTLC1 protein"
                     /protein_id="AAH68537.1"
                     /db_xref="GeneID:10558"
                     /db_xref="MIM:605712"
                     /translation="MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTY
                     KLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECIN
                     FASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEE
                     AIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLE
                     RLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEES
                     LSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQG
                     YCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSP
                     AFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTRARYLEKEEKCLPPPRGRTGESC
                     VHHQGGSPGRPALGRVPGPWPPATQHAERTQDSRWPWSGLKESKNMWIFDRIVTKWCQ
                     YGPIV"
BASE COUNT          818 a          505 c          556 g          863 t
ORIGIN      
        1 ggctaactat ggcgaccgcc acggagcagt gggttctggt ggagatggta caggcgcttt
       61 acgaggctcc tgcttaccat cttattttgg aagggattct gatcctctgg ataatcagac
      121 ttcttttctc taagacttac aaattacaag aacgatctga tcttacagtc aaggaaaaag
      181 aagaactgat tgaagagtgg caaccagaac ctcttgttcc tcctgtccca aaagaccatc
      241 ctgctctcaa ctacaacatc gtttcaggcc ctccaagcca caaaactgtg gtgaatggaa
      301 aagaatgtat aaacttcgcc tcatttaatt ttcttggatt gttggataac cctagggtta
      361 aggcagcagc tttagcatct ctaaagaagt atggcgtggg gacttgtgga cccagaggat
      421 tttatggcac atttgatgtt catttggatt tggaagaccg cctggcaaaa tttatgaaga
      481 cagaagaagc cattatatac tcatatggat ttgccaccat agccagtgct attcctgctt
      541 actctaaaag aggggacatt gtttttgtag atagagctgc ctgctttgct attcagaaag
      601 gattacaggc atcccgtagt gacattaagt tatttaagca taatgacatg gctgacctcg
      661 agcgactact aaaagaacaa gagatcgaag atcaaaagaa tcctcgcaag gctcgtgtaa
      721 ctcggcgttt cattgtagta gaaggattgt atatgaatac tggaactatt tgtcctcttc
      781 cagaattggt taagttaaaa tacaaataca aagcaagaat cttcctggag gaaagccttt
      841 catttggagt cctaggagag catggccgag gagtcactga acactatgga atcaatattg
      901 atgatattga tcttatcagt gccaacatgg agaatgcact tgcttctatt ggaggtttct
      961 gctgtggcag gtcttttgta attgaccatc agcgactttc cggccaggga tactgctttt
     1021 cagcttcgtt acctcccctg ttagctgctg cagcaattga ggccctcaac atcatggaag
     1081 agaatccagg tatttttgca gtgttgaagg aaaagtgcgg acaaattcat aaagctttac
     1141 aaggcatttc tggattaaaa gtggtggggg agtccctttc tccagccttt cacctacaac
     1201 tggaagagag cactgggtct cgcgagcaag atgtcagact gcttcaggaa attgtagatc
     1261 aatgcatgaa cagaagtatt gcattaactc gggcgcgcta cttggagaaa gaagagaagt
     1321 gtctccctcc tcccagagga agaactggag agagctgcgt ccaccatcaa ggaggtagcc
     1381 caggccgtcc tgctctaggc agagtcccgg gaccatggcc tcctgccaca caacacgcag
     1441 agaggactca agactcccgc tggccatgga gtggcctgaa agagagcaag aacatgtgga
     1501 tctttgatag gattgttacc aaatggtgtc agtatggacc aattgtgtga ccatgagaag
     1561 gatgcttatt ttttttaaaa agaaaacaca tctaaaagcc caggaactga tttttttaag
     1621 aggaaaacta atgacagtgt ataactgatg tttaaattgt gcatttagta ctatttaaat
     1681 gttttcttat actagtattt tatattcttt tgttgtcgtt taaaactgga gcttcagtgt
     1741 ctcttccctc cctctaatag taatggttca gtaagcactc cttaactcct tagtatttca
     1801 tagaaaaatg actgcaacat taaagctaag aggaacactt caacatatgt ggtacaaatt
     1861 tatattgaag atctaaataa accacgtatt ttccagtctt cgttgtgtga agctaaatgg
     1921 tggctaaaag gaacactttt tgtgtgatta ttataaactt tgcattgtat ttgaatctta
     1981 gaacttttgt acacactaaa tattgatgtc acaccatttc taatctgagc atccttagcc
     2041 agagaatatt cattatactt cctaagtgag caataattta aatcagaagc tattttattt
     2101 taatgtaatt aacctttctt tacatttctt atgtgttcac ctctaatctg ttttaggaag
     2161 agagttggtt attatgttga tcccataata taaatcatat cctttatatt ttagaatatc
     2221 tcaaatgtat tccttttttg tatggtgggt ttgcctaggg acgtgtaact acaggctttt
     2281 actaagccaa ggaaaaagag aatttttctt ttcatcttac aaattccaga tatctacaaa
     2341 agatgtgaaa gcactaaaaa taccattttt aagcagtact ttacctgttt tttctttagc
     2401 aaaccaggtt atgtggtgta aaggtttgtt atacgtgcca caatatagca tataaatatt
     2461 atgccatcat tccttctctt gttaaaggta gaagaataaa attgtgattt ttataacctg
     2521 tgcttattac tcaaatggtc ttcaacatct ttttaaacaa cacatacttt ttgaatgttc
     2581 agtttctatt ttgcttgagg tattttgtac atatgtgcct tgtgattgct gctgctttaa
     2641 aggataaagt actctttggg ggatgagtct ggtttgtttt gttttatttt ttaatgaaat
     2701 aaacctatat tcctgattat tagtccaaaa aaaaaaaaaa aa
//