LOCUS       BC068514                2725 bp    mRNA    linear   HUM 09-JUN-2008
DEFINITION  Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:87305
            IMAGE:5299667), complete cds.
ACCESSION   BC068514
VERSION     BC068514.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2725)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 168 Row: g Column: 1
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 63003896.
FEATURES             Location/Qualifiers
     source          1..2725
                     /db_xref="H-InvDB:HIT000263071"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:87305 IMAGE:5299667"
                     /tissue_type="Brain, hypothalamus"
                     /clone_lib="NIH_MGC_96"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..2725
                     /gene="NKRF"
                     /gene_synonym="ITBA4"
                     /gene_synonym="NRF"
                     /db_xref="GeneID:55922"
                     /db_xref="HGNC:HGNC:19374"
                     /db_xref="MIM:300440"
     CDS             148..2220
                     /gene="NKRF"
                     /gene_synonym="ITBA4"
                     /gene_synonym="NRF"
                     /codon_start=1
                     /product="NFKB repressing factor"
                     /protein_id="AAH68514.1"
                     /db_xref="GeneID:55922"
                     /db_xref="HGNC:HGNC:19374"
                     /db_xref="MIM:300440"
                     /translation="MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPK
                     KQAGSKFHARPRFEPVHFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQ
                     DSFSIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQ
                     TFPESVVAEKQYFIEKLTATIWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIY
                     APLKEIPPADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQK
                     RIEVRVVRRKFKHTFGEDLVVCQIGMSSYEFPPALKQPEDLVVLGKDASGQPIFNASA
                     KHWTNFVITENANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYG
                     TKKTSKHAAADEALKILQKTQPTYPSVKSSQCHTGSSPRGSGKKKDIKDLVVYENSSN
                     PVCTLNDTAQFNRMTVEYVYERMTGLRWKCKVILESEVIAEAVGVKKTVKYEAAGEAV
                     KTLKKTQPTVINNLKKGAVEDVISRNEIQGRSAEEAYKQQIKEDNIGNQLLRKMGWTG
                     GGLGKSGEGIREPISVKEQHKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTF
                     SRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVVGRKRRKEDLLDQLKQEGQVGHY
                     ELVMPQAN"
BASE COUNT          877 a          547 c          592 g          709 t
ORIGIN      
        1 gaaagtgact ggcagtgggc tctgcggcgc agcttcatct gtcggcacct gcacagctat
       61 cccggggctg ccctcgacca gctcctcgcg ctctccgccg cctggaccaa ccacgtcttc
      121 ctgggctgca ggtacagccc acgcttgatg gaaaaaattc tccaaatggc tgaaggtatt
      181 gatattgggg agatgccttc atatgatctg gtgctgtcca aaccttccaa aggtcaaaaa
      241 cgccacctct caacatgtga tggtcaaaat cctcctaaaa agcaagccgg ttccaaattc
      301 catgcgagac ctcgttttga gcctgtacat tttgtagcta gtagttcaaa agatgaaaga
      361 caggaagatc cttatggccc tcaaacaaaa gaggtaaatg aacaaacaca ttttgccagc
      421 atgccaagag acatctacca agattatact caagactctt tcagtataca agatgggaat
      481 tctcagtatt gtgattcatc aggattcatt ctcacaaaag accagcctgt aacagccaac
      541 atgtattttg acagtgggaa ccctgcccca agcaccacat cacagcaggc aaactctcag
      601 tcaactcctg agccttcacc atcacagaca tttcccgagt ctgtggtagc cgagaagcag
      661 tattttattg aaaaattaac ggcgacaatc tggaagaacc tttctaatcc agaaatgact
      721 tctggatctg ataaaattaa ttatacatat atgttaactc gttgtattca ggcgtgtaag
      781 acaaatcctg agtatatata tgctccttta aaggaaattc ctcctgccga catccccaaa
      841 aataaaaaac ttctaactga tggctatgct tgtgaagtta gatgccaaaa tatctactta
      901 actacaggtt atgctggcag caagaatggg tccagggatc gagctacaga gctagctgta
      961 aaactcttgc agaaacgtat tgaagttaga gttgtccggc ggaaattcaa gcatacattt
     1021 ggagaggacc tcgtggtgtg tcagattggc atgtcctcct atgaatttcc tccagctctg
     1081 aagcaaccag aagacctggt ggtgctgggt aaagatgctt ccgggcagcc aatttttaat
     1141 gcttctgcca aacactggac caattttgtc attacagaaa atgcaaatga tgcaattggt
     1201 atccttaaca attctgcctc attcaacaag atgtcaattg aatacaaata tgagatgatg
     1261 ccaaatcgca catggcgttg tcgagtgttt ttacaagatc actgcttagc tgaaggttat
     1321 ggaaccaaga aaacaagtaa acatgcagct gccgacgagg ctttgaaaat tcttcaaaaa
     1381 acacagccca cttatccatc tgtcaaaagt tcacaatgcc atacaggctc ttcacccaga
     1441 ggatctggaa agaagaaaga tataaaggat cttgtagttt atgagaattc ttcaaatccc
     1501 gtgtgcacgc tgaacgacac agctcagttt aaccgaatga cagttgagta tgtctatgaa
     1561 aggatgacag gcctccgctg gaaatgcaaa gtgattctag agagtgaagt aattgcagaa
     1621 gcagttgggg tgaagaaaac tgtcaaatat gaagctgctg gggaagctgt gaaaaccctc
     1681 aaaaagaccc agccaactgt cattaacaac ttgaagaaag gagctgttga agatgtgatt
     1741 tcaagaaatg aaattcaggg ccgctcagca gaggaggctt acaaacagca aatcaaagaa
     1801 gataatattg gaaatcagct gctgagaaag atgggttgga ctggtggtgg tttaggtaaa
     1861 tctggtgagg gcatacggga gcctatctca gtgaaagagc agcataagcg ggaagggctt
     1921 ggtctggatg tagagagggt gaataaaatt gccaagagag atattgaaca gatcatcaga
     1981 aactacgccc gctccgagag ccacacagat ttgactttct ctagagagct gactaatgat
     2041 gaacggaagc aaatacatca gattgcccag aagtatggtc ttaagagtaa gtctcatggg
     2101 gtgggccatg ataggtacct agtggtaggt agaaaaagac ggaaggaaga cctactagat
     2161 cagctcaaac aggaaggcca agtgggccat tacgagcttg ttatgcctca agcaaattga
     2221 gatcttacta atttattttg taaatgccta atgaggcaga tttttgaatt aaagaaatgc
     2281 tacatgttcc ggttgcagag tatattcata agatgtctca ccttgttcat ttcacatagt
     2341 ggtttattag atattggaac ctaaagaatt ctgtccactt gtattagctt aatccagcag
     2401 atgatattgt gcagttactg tttgtgtctt tgatattgct gtgtccctca gattttagta
     2461 gtttgacaag caagaacaca tatccaaatg gaattttacc ctgagaaatt atcattttaa
     2521 agggcatagc acagcaatct gcaacaatat gtaaagttga tattgactac aataaaaatc
     2581 cagtcttaat tcaagattta ctgaaaatgt cagatcattt tgtattaatc tattttcatc
     2641 tttgtgtgaa gccagttata gaatgtttga caataaattg tgctgtacac gtaaatgtcc
     2701 ttaccaacta aaaaaaaaaa aaaaa
//