LOCUS BC068514 2725 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:87305 IMAGE:5299667), complete cds. ACCESSION BC068514 VERSION BC068514.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2725) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2725) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 168 Row: g Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 63003896. FEATURES Location/Qualifiers source 1..2725 /db_xref="H-InvDB:HIT000263071" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87305 IMAGE:5299667" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2725 /gene="NKRF" /gene_synonym="ITBA4" /gene_synonym="NRF" /db_xref="GeneID:55922" /db_xref="HGNC:HGNC:19374" /db_xref="MIM:300440" CDS 148..2220 /gene="NKRF" /gene_synonym="ITBA4" /gene_synonym="NRF" /codon_start=1 /product="NFKB repressing factor" /protein_id="AAH68514.1" /db_xref="GeneID:55922" /db_xref="HGNC:HGNC:19374" /db_xref="MIM:300440" /translation="MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPK KQAGSKFHARPRFEPVHFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQ DSFSIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQ TFPESVVAEKQYFIEKLTATIWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIY APLKEIPPADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQK RIEVRVVRRKFKHTFGEDLVVCQIGMSSYEFPPALKQPEDLVVLGKDASGQPIFNASA KHWTNFVITENANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYG TKKTSKHAAADEALKILQKTQPTYPSVKSSQCHTGSSPRGSGKKKDIKDLVVYENSSN PVCTLNDTAQFNRMTVEYVYERMTGLRWKCKVILESEVIAEAVGVKKTVKYEAAGEAV KTLKKTQPTVINNLKKGAVEDVISRNEIQGRSAEEAYKQQIKEDNIGNQLLRKMGWTG GGLGKSGEGIREPISVKEQHKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTF SRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVVGRKRRKEDLLDQLKQEGQVGHY ELVMPQAN" BASE COUNT 877 a 547 c 592 g 709 t ORIGIN 1 gaaagtgact ggcagtgggc tctgcggcgc agcttcatct gtcggcacct gcacagctat 61 cccggggctg ccctcgacca gctcctcgcg ctctccgccg cctggaccaa ccacgtcttc 121 ctgggctgca ggtacagccc acgcttgatg gaaaaaattc tccaaatggc tgaaggtatt 181 gatattgggg agatgccttc atatgatctg gtgctgtcca aaccttccaa aggtcaaaaa 241 cgccacctct caacatgtga tggtcaaaat cctcctaaaa agcaagccgg ttccaaattc 301 catgcgagac ctcgttttga gcctgtacat tttgtagcta gtagttcaaa agatgaaaga 361 caggaagatc cttatggccc tcaaacaaaa gaggtaaatg aacaaacaca ttttgccagc 421 atgccaagag acatctacca agattatact caagactctt tcagtataca agatgggaat 481 tctcagtatt gtgattcatc aggattcatt ctcacaaaag accagcctgt aacagccaac 541 atgtattttg acagtgggaa ccctgcccca agcaccacat cacagcaggc aaactctcag 601 tcaactcctg agccttcacc atcacagaca tttcccgagt ctgtggtagc cgagaagcag 661 tattttattg aaaaattaac ggcgacaatc tggaagaacc tttctaatcc agaaatgact 721 tctggatctg ataaaattaa ttatacatat atgttaactc gttgtattca ggcgtgtaag 781 acaaatcctg agtatatata tgctccttta aaggaaattc ctcctgccga catccccaaa 841 aataaaaaac ttctaactga tggctatgct tgtgaagtta gatgccaaaa tatctactta 901 actacaggtt atgctggcag caagaatggg tccagggatc gagctacaga gctagctgta 961 aaactcttgc agaaacgtat tgaagttaga gttgtccggc ggaaattcaa gcatacattt 1021 ggagaggacc tcgtggtgtg tcagattggc atgtcctcct atgaatttcc tccagctctg 1081 aagcaaccag aagacctggt ggtgctgggt aaagatgctt ccgggcagcc aatttttaat 1141 gcttctgcca aacactggac caattttgtc attacagaaa atgcaaatga tgcaattggt 1201 atccttaaca attctgcctc attcaacaag atgtcaattg aatacaaata tgagatgatg 1261 ccaaatcgca catggcgttg tcgagtgttt ttacaagatc actgcttagc tgaaggttat 1321 ggaaccaaga aaacaagtaa acatgcagct gccgacgagg ctttgaaaat tcttcaaaaa 1381 acacagccca cttatccatc tgtcaaaagt tcacaatgcc atacaggctc ttcacccaga 1441 ggatctggaa agaagaaaga tataaaggat cttgtagttt atgagaattc ttcaaatccc 1501 gtgtgcacgc tgaacgacac agctcagttt aaccgaatga cagttgagta tgtctatgaa 1561 aggatgacag gcctccgctg gaaatgcaaa gtgattctag agagtgaagt aattgcagaa 1621 gcagttgggg tgaagaaaac tgtcaaatat gaagctgctg gggaagctgt gaaaaccctc 1681 aaaaagaccc agccaactgt cattaacaac ttgaagaaag gagctgttga agatgtgatt 1741 tcaagaaatg aaattcaggg ccgctcagca gaggaggctt acaaacagca aatcaaagaa 1801 gataatattg gaaatcagct gctgagaaag atgggttgga ctggtggtgg tttaggtaaa 1861 tctggtgagg gcatacggga gcctatctca gtgaaagagc agcataagcg ggaagggctt 1921 ggtctggatg tagagagggt gaataaaatt gccaagagag atattgaaca gatcatcaga 1981 aactacgccc gctccgagag ccacacagat ttgactttct ctagagagct gactaatgat 2041 gaacggaagc aaatacatca gattgcccag aagtatggtc ttaagagtaa gtctcatggg 2101 gtgggccatg ataggtacct agtggtaggt agaaaaagac ggaaggaaga cctactagat 2161 cagctcaaac aggaaggcca agtgggccat tacgagcttg ttatgcctca agcaaattga 2221 gatcttacta atttattttg taaatgccta atgaggcaga tttttgaatt aaagaaatgc 2281 tacatgttcc ggttgcagag tatattcata agatgtctca ccttgttcat ttcacatagt 2341 ggtttattag atattggaac ctaaagaatt ctgtccactt gtattagctt aatccagcag 2401 atgatattgt gcagttactg tttgtgtctt tgatattgct gtgtccctca gattttagta 2461 gtttgacaag caagaacaca tatccaaatg gaattttacc ctgagaaatt atcattttaa 2521 agggcatagc acagcaatct gcaacaatat gtaaagttga tattgactac aataaaaatc 2581 cagtcttaat tcaagattta ctgaaaatgt cagatcattt tgtattaatc tattttcatc 2641 tttgtgtgaa gccagttata gaatgtttga caataaattg tgctgtacac gtaaatgtcc 2701 ttaccaacta aaaaaaaaaa aaaaa //