LOCUS BC068508 3095 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens phosphatase and actin regulator 4, mRNA (cDNA clone
MGC:87269 IMAGE:4825777), complete cds.
ACCESSION BC068508
VERSION BC068508.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3095)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3095)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: g Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254956
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3095
/db_xref="H-InvDB:HIT000263065"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87269 IMAGE:4825777"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3095
/gene="PHACTR4"
/gene_synonym="RP11-442N24__A.1"
/db_xref="GeneID:65979"
/db_xref="HGNC:HGNC:25793"
/db_xref="MIM:608726"
CDS 199..2091
/gene="PHACTR4"
/gene_synonym="RP11-442N24__A.1"
/codon_start=1
/product="PHACTR4 protein"
/protein_id="AAH68508.1"
/db_xref="GeneID:65979"
/db_xref="HGNC:HGNC:25793"
/db_xref="MIM:608726"
/translation="MVLDSVEAGDTTPPTKRKSKFSGFGKIFKPWKWRKKKSSDKFKE
TSEVLERKISMRKPREELVKRGVLLEDPEQGGEDPGKPSDAMLKNGHTTPIGNARSSS
PVQVEEEPVRLASLRKAIPEEDLKKRLGSTGSQPNSEAESVPENVPKPPLLPPKRPLS
SSHEASEGQAKDATSSGGTARFIISTSITTAPAATTAATSLAKTVNLSVTPSPAPRTL
PAAPASTNTTATPSLTHMVPAKQPPIPPPKPAHRNSNPVIAELSQAINSGTLLSKPSP
PLPPKRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTH
IPPEPPRTPPFPAKTFQVVPEIEFPPSLDLHQEIPQQEDQKKEVPKRILDQNFGEPHI
PSRLPPLPLHIRIQQALTSPLPMTPILEGSHRAHSLLFENSDSFSEDSSTLGRTRSLP
ITIEMLKVPDDEEEEEQTCPSTFSEEMTPTSVIPKLPQCLREEEEKESDSDSEGPIQY
RDEEDEDESYQSALANKVKRKDTLAMKLNHRPSEPELNLNSWPCKSKEEWNEIRHQIG
NTLIRRLSQRPTPEELEQRNILQQYRVKFGLKSLLTEKVWASLGLFVSMFSLTNPSPV
LSALLG"
BASE COUNT 920 a 816 c 697 g 662 t
ORIGIN
1 ggtgctgcct ggcggccaac gggccaggta ggatttccgg gagaggctgc tgtggaggct
61 gaggaggcgg cggcggagat ctggaaacag tatctcacct ccctaaactg gttaatagtg
121 gcatggaaga tccatttgac ttctccagag aaccttggaa cagtagagga agcagaccag
181 cccactacag agccaggcat ggtcctggac agtgtggaag caggagacac aacacctcct
241 accaaaagga agagcaagtt ctcaggcttt ggcaagatct tcaagccctg gaaatggagg
301 aaaaaaaaaa gtagtgataa atttaaagag acttcagaag ttttagaacg gaaaatatct
361 atgcgaaagc caagagaaga gctggttaag agaggggttc tgttggaaga ccctgagcaa
421 ggtggtgagg atccaggaaa gccaagcgat gccatgttaa agaatggcca taccaccccc
481 atagggaatg ccagatcatc tagtccagtc caagtagagg aagagccagt aagattagca
541 agtcttagga aagctattcc agaagaggac ctaaagaaac gactaggctc aactggaagc
601 cagcctaatt ctgaagcaga gtctgttcct gagaatgtac ccaaaccacc tttacttcct
661 cccaaaagac ccttgtcctc ttctcatgaa gcaagtgaag ggcaagcaaa ggatgccact
721 tcctctggcg gcacggcaag gttcatcatc tccacctcca tcaccacagc acccgctgcc
781 accactgctg ccacaagcct tgcaaagact gttaatctct ctgtcacccc ttccccagca
841 cccaggactc tgcctgctgc tcctgccagc actaacacta ctgctacccc aagcctcact
901 catatggtcc ctgccaagca gccccctatc cctcccccta aaccagctca cagaaatagc
961 aaccctgtca ttgctgaact gtcccaagca ataaacagtg gtacattgtt atcaaaaccg
1021 tccccaccct taccacctaa gagaggcatt ccatcaacct cagtacccac cttggagtct
1081 gctgctgcca tcaccacaaa aacaccaagt gatgaaagag agaagagcac gtgttctatg
1141 ggctcggaac tactaccaat gatctcacct cgctctccgt cccccccact gcctactcat
1201 atacctccag agcctccacg cacccctcca ttccctgcta agacttttca agttgtgcca
1261 gaaattgagt ttccaccatc cttagatcta caccaggaga ttccccagca ggaagatcag
1321 aaaaaggaag tccccaagag gatactggac cagaactttg gggagcccca tataccctct
1381 aggctgcctc cactcccact gcatattcga atccagcagg ccctcaccag cccacttccc
1441 atgactccta ttctggaggg ttctcacaga gctcattcgt tgctttttga aaacagtgac
1501 agcttttctg aggacagcag tacgctgggt cggaccaggt ctcttcccat cactattgaa
1561 atgctaaaag ttccagacga tgaagaagaa gaggagcaaa cctgtccatc cacattcagt
1621 gaagaaatga cacctacctc agtcattcct aaattaccac agtgtctacg ggaggaagaa
1681 gagaaggaga gcgactctga ttcagaaggt cccattcagt accgagatga agaagatgaa
1741 gatgaaagct atcagagtgc tctcgccaac aaagtgaaga ggaaagacac actggcaatg
1801 aagttgaacc acagacccag tgaaccagag ttgaacctga attcttggcc ttgtaaaagc
1861 aaggaggagt ggaatgaaat acggcaccag attggaaaca cactgatccg gcgactgagt
1921 caaagaccaa caccagaaga actagaacaa cgcaatatat tgcaacaata tagagtgaaa
1981 tttggcctta aaagtctcct cactgagaag gtttgggctt ccttggggct atttgtgagc
2041 atgttcagtc tgaccaatcc atcccctgtt ctctcagcac tacttggcta aaaatgaagc
2101 tgatcgtcag gcagaaaaac gagaaattaa acgtcggctc actagaaagc tcagtcaaag
2161 gccaactgtc gctgaactcc ttgccaggaa gattctgagg tttaatgaat atgtagaggt
2221 aacagatgct caagattatg accggcgagc cgacaaacct tggaccaaac tgacccctgc
2281 tgacaaggct gccataagaa aagaattaaa tgaatttaaa agctccgaga tggaggttca
2341 tgaagagagc aaacatttta cacggcaggg gcctggtgca gtggtacaca cctgtaatcc
2401 tagcactttg ggaggccgag gtgggaggat cactttgaga ccagcctggg aaacacgcta
2461 ccatcgtcca tgatgccaaa ggttgagaga ggaatcaaca tggctgcttt gctgcttcct
2521 tctccaaagt gacatatgga gggaacttta gcacttccca gcacagccag aattgcatcc
2581 tctgggatct tctgaggtgg acagcacttt gaatgtagca tttcactgga acagagtctt
2641 atgtgctgca ccgggggcaa aacaacactt tgtcagtgct tttgaacctt tcaatattgt
2701 agcatgcttg aggagttttt cccttactgg ccaccaaagt tctgaaccac ttgcaggttc
2761 caggttttac tggctgcacc acaccccttc ccctagatga ctgcctgtgc agagacacag
2821 tttgcaccat tagccttacc tgccctgccc tgattgtgag acccaaatgt gtaggctcta
2881 aattccagcc atcaaatcca attcctggtg gggaaaacct tctggagacc cccaaccttc
2941 tgataaaaga gtctctacct ccagggaaag ccttcttacc acactggcat atcagatgaa
3001 agcattgcac tgtacctctc gtaacacagc aatacagtcc tcttgaggca ctcaagcctg
3061 agaggaagct caggatctga aaaaaaaaaa aaaaa
//