LOCUS BC068448 3369 bp mRNA linear HUM 17-DEC-2007
DEFINITION Homo sapiens N-terminal EF-hand calcium binding protein 1, mRNA
(cDNA clone MGC:86997 IMAGE:5264496), complete cds.
ACCESSION BC068448
VERSION BC068448.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: k Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377716.
FEATURES Location/Qualifiers
source 1..3369
/db_xref="H-InvDB:HIT000263006"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:86997 IMAGE:5264496"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3369
/gene="NECAB1"
/gene_synonym="STIP-1"
/db_xref="GeneID:64168"
/db_xref="HGNC:HGNC:20983"
CDS 108..1163
/gene="NECAB1"
/gene_synonym="STIP-1"
/codon_start=1
/product="N-terminal EF-hand calcium binding protein 1"
/protein_id="AAH68448.1"
/db_xref="GeneID:64168"
/db_xref="HGNC:HGNC:20983"
/translation="MEDSQETSPSSNNSSEELSSALHLSKGMSIFLDILRRADKNDDG
KLSFEEFKAYFADGVLSGEELHELFHTIDTHNTNNLDTEELCEYFSQHLGEYENVLAA
LEGLNLSILKAMGKTKKDYQEASNLEQFVTRFLLKETLNQLQSLQNSLECAMETTEEQ
TRQERQGPAKPEVLSIQWPGKRSSRRVQRHNSFSPNSPQFNVSGPGLLEEDNQWMTQI
NRLQKLIDRLEKKDLKLEPPEEEIIEGNTKSHIMLVQRQMSVIEEDLEEFQLALKHYV
ESASSQSGCLRISIQKLSNESRYMIYEFWENSSVWNSHLQTNYSKTFQRSNVDFLETP
ELTSTMLVPASWWILNN"
BASE COUNT 1182 a 593 c 608 g 986 t
ORIGIN
1 ggatccagag cccggcggcg gcgaagcagc agctgcggcc gcgcccttgc cagagccggt
61 gcgtccgcct agccccgctc cgcctgaggc cgtcagggct cccgaggatg gaagattccc
121 aggagacatc gccgtcctcc aacaactcct cggaggagct cagctctgct ctgcacctgt
181 ccaagggcat gtcgatcttc ctcgacatac tgaggagagc agacaaaaat gatgatggaa
241 aattatcctt tgaagaattc aaagcatatt ttgcagatgg tgttctcagt ggagaagaat
301 tacacgagct tttccatacc attgatacac ataatactaa taatcttgac acagaagagc
361 tatgtgaata tttttctcag cacttgggcg agtatgagaa tgtactagca gcacttgaag
421 gcctgaatct ttccatcctg aaggcaatgg gcaaaacaaa gaaagactac caagaagcct
481 ccaatttgga acaattcgta actagatttt tattgaagga aaccctgaat cagctgcagt
541 ctctccagaa ttccctggaa tgtgccatgg aaactactga ggagcaaacc cgtcaagaaa
601 ggcaagggcc agccaagcca gaagtcctgt cgattcaatg gcctggaaaa cgatcaagcc
661 gccgagtcca gagacacaac agcttctccc caaacagccc tcagtttaat gtcagcggtc
721 caggcttatt agaagaagac aaccagtgga tgacccagat aaatagactc cagaaattaa
781 ttgatagact ggaaaagaag gatctcaaac tcgaaccacc agaagaagaa attattgaag
841 ggaatactaa atctcacatc atgcttgtgc agcggcagat gtctgtgata gaagaggacc
901 tggaagaatt ccagctcgct ctgaaacact acgtggagag tgcttcctct caaagtggat
961 gcttgcgtat ttctatacag aagctttcaa atgaatctcg ctacatgatc tatgagttct
1021 gggagaatag tagtgtatgg aatagccacc ttcagacaaa ttatagcaag acattccaaa
1081 gaagtaatgt ggatttcttg gaaactccag aactcacatc tacaatgcta gttcctgctt
1141 cgtggtggat cctgaacaac tagatgttcc tagacatttt ctttatggtt ccaagtgcaa
1201 aacaggtgtt cttatctaaa acgtcaatta gaaaattatc tgcggttgtt aatctactgt
1261 atatttttgt ttggtatatt tactaagtgc actctttcaa aacttattct ataactttat
1321 caattcatgt gaattttagc tcaattttca aagttcacta atattctcaa tatttaatgc
1381 taaatgcttt gctacattgt aactcaccta aaacctttta gtgacaaaat cctaatatgt
1441 ggaaaaaagc atatgcataa aggaataata ttgtgaaaat gaatctgtta tgataaagaa
1501 aaaataaagt ggaaactttt agagtattac ttcatagggc agattttgta aactgtcgta
1561 tactgtaaag ggttaaatca gcgttttgtg atttttaagt aactgtgagt gaagtttatt
1621 cttcaacaat gtctactcca tccccaaccc aactcacagc cctatgacta ctatctttgc
1681 attagttaaa aagttagtat ataggcatca aacaaccttg gctgtaacct atagaatctc
1741 tatccacgta tcaggttata gactggtttt tcaaaagtga acaatcctgt gataagttgg
1801 agtaccattt agtaatacag caacattgtg tcatttatta gcatcataat tctttgttat
1861 gtaagttaaa tatatcaaga aagaagagac tgtttggaaa aatgtggttc aagttttatg
1921 ctatatagtt ttggtatgcg atacagacag ctaacttttc ttatgaaaaa tacatatttg
1981 catgtaaaca atgatttcaa aatacttgaa aaataaaatt ttaacccaaa tgaataacta
2041 agaaatataa aacaagcaca aaatcttagg gaagtcataa aatagtagtg aaagtattag
2101 acagaagaca tctgttttcg aatttcaaca ctagaatgac taaaactatc tacctataga
2161 actatctgta gatagtatac tatctacact ctgctcaaca agctcagaaa ttaaatattt
2221 ttaataataa aaatctgttc tggttataaa ccttgctaat gaaaatacaa tacatataaa
2281 aatgtatagc catgttattt tctagtataa attcctttga aactataagt ctttgaggaa
2341 aattataagg taaaattttc ctgtttttcc ccctttgaaa aactcaggaa aaaaggaaga
2401 ttgaactaat aaaattttat ttcttaaata taaatttgac ctaaaatatt ttctcaaact
2461 aattcatgaa acagcaactt ttaccaatac ctttgtatac tctcagttct cattcagtat
2521 aaataaaatt ttaaaatcct ttcatagttc tattagaaat aagtagtaaa ttttgatata
2581 ttgtacatac acacgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtatttgt
2641 gtgcctctgg tcaactctaa ggatgacaga cactgtgtaa caacacctgg gtcaactctt
2701 ttaatttata tacaaagcaa agaacaacat taatggagat gcacaatgat tattcaaaca
2761 agctatatat atgtacaaag gcaaacagac acataacagt ctctgcagac tgattgtata
2821 tagtaagaaa agatcaaaag actttaaaac ctaaatgact tttgacatac aaactcttct
2881 tgagaatgtt tgttgtaaat ggtttcaaaa atacaaatta tagccaatca aaacattgct
2941 ttggttggtg catttaagta tccaactcaa aaagcatatc aaatattttg ggtactaggc
3001 agtttccaaa gtagcatggt agtattactt gttaaaaggg ttctgttttc attaacagta
3061 ctaagtggaa gggatctgca gattccaaac tggaataagc tctatcatat tctgaaacaa
3121 gaattagaat gacatgagaa cgggcaaata acaaagcaaa ccaatataat tatatggtca
3181 ttctgacccc agctcttata caaattatac atgtattttt gtgtatgttt gtgagagttg
3241 tatgtatgtg aatgtgtgtg agtgtgtatt cacatacaca tatatactgg aacctatagt
3301 agaaaaggaa actagtaggg ccaaaaaaaa aaagaaaaag aaaaagaaaa aagaaaaaaa
3361 aaaaaaaaa
//