LOCUS BC068080 1110 bp mRNA linear HUM 06-JUN-2006 DEFINITION Homo sapiens leucine-rich repeat kinase 1, mRNA (cDNA clone IMAGE:6209274), complete cds. ACCESSION BC068080 VERSION BC068080.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1110) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1110) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-MAR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 54 Row: i Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1110 /db_xref="H-InvDB:HIT000262939" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6209274" /tissue_type="Pancreas, ductal carcinoma" /clone_lib="NIH_MGC_110" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1110 /gene="LRRK1" /gene_synonym="FLJ23119" /gene_synonym="FLJ27465" /gene_synonym="KIAA1790" /gene_synonym="Roco1" /db_xref="GeneID:79705" /db_xref="HGNC:HGNC:18608" CDS 239..1024 /gene="LRRK1" /gene_synonym="FLJ23119" /gene_synonym="FLJ27465" /gene_synonym="KIAA1790" /gene_synonym="Roco1" /codon_start=1 /product="LRRK1 protein" /protein_id="AAH68080.1" /db_xref="GeneID:79705" /db_xref="HGNC:HGNC:18608" /translation="MSQRPPSMYWCVGPEESAVCPERAMETLNGAGDTGGKPSTRGGD PAARSRRTEGIRAAYRRGDRGGARDLLEEACDQCASQLEKGQLLSIPAAYGDLEMVRY LLSKRLVELPTEPTDDNPAVVAAYFGHTAVVQELLESLPGPCSPQRLLNWMLALACQR GHLGVVKLLVLTHGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAYFC SYILLDSPDPSKHLLRKYFIEASPLPSSYPGKTVSSHCLWSVF" BASE COUNT 230 a 321 c 350 g 209 t ORIGIN 1 ggcgcggggg gcagacggcg gtgggacggc caggccccgg ccccgccagt gtgtccgccc 61 ggccccgcgt cccggagcgc ccgcacccgg ccccgccgcc gcctcagatc aagaaagctt 121 tctgctcagc catggctacg agtccacgcc ttaatgcacc ccacagccag cggcagtggc 181 agtgacaaca gcgggacctg cctttgaaga tcggctgctg caagggttga tggctggcat 241 gtcgcaaaga ccccccagca tgtactggtg tgtggggccg gaggagtcag ctgtgtgtcc 301 agaacgtgcc atggagacgc ttaacggtgc cggggacacg ggcggcaagc cgtccacgcg 361 gggcggtgac cctgcagcgc ggtcccgcag gacggaaggc atccgcgccg cgtacaggcg 421 gggagaccgc ggcggcgccc gggacctgct ggaggaggcc tgcgaccagt gcgcgtccca 481 gctggaaaag ggccagcttc tgagcatccc ggcagcctat ggggatctgg agatggtccg 541 ctacctactc agcaagagac tggtggagct gcccaccgag cccacggatg acaacccagc 601 cgtggtggca gcgtattttg gacacacggc agttgtgcag gaattgcttg agtccttacc 661 aggtccctgc agtccccagc ggcttctgaa ctggatgctg gccttggctt gccagcgagg 721 gcacctgggg gttgtgaagc tcctggtcct gacgcacggg gctgacccgg agagctacgc 781 tgtcaggaag aatgagttcc ctgtcatcgt gcgcttgccc ctgtatgcgg ccatcaagtc 841 agggaatgaa gacattgcaa tattcctgct tcggcatggg gcctatttct gttcctacat 901 cttgctggat agtcctgacc ccagcaaaca tctgctgaga aagtacttca ttgaagccag 961 tcccttgccc agcagttatc cgggaaaaac agtgagtagt cactgcctgt ggagtgtgtt 1021 ttagttcctt ttgtgctgct gtaacagaat cctgcagact gggtaattta taataaacag 1081 aaatatattt ggaaaaaaaa aaaaaaaaaa //