LOCUS BC067844 1967 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens teratocarcinoma-derived growth factor 1, mRNA (cDNA
clone MGC:87434 IMAGE:5286020), complete cds.
ACCESSION BC067844
VERSION BC067844.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1967)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1967)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507424.
FEATURES Location/Qualifiers
source 1..1967
/db_xref="H-InvDB:HIT000262812"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87434 IMAGE:5286020"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1967
/gene="TDGF1"
/gene_synonym="CR"
/gene_synonym="CRGF"
/gene_synonym="CRIPTO"
/gene_synonym="Cripto-1"
/db_xref="GeneID:6997"
/db_xref="HGNC:HGNC:11701"
/db_xref="MIM:187395"
CDS 183..749
/gene="TDGF1"
/gene_synonym="CR"
/gene_synonym="CRGF"
/gene_synonym="CRIPTO"
/gene_synonym="Cripto-1"
/codon_start=1
/product="teratocarcinoma-derived growth factor 1"
/protein_id="AAH67844.1"
/db_xref="GeneID:6997"
/db_xref="HGNC:HGNC:11701"
/db_xref="MIM:187395"
/translation="MDCRKMARFSYSVIWIMAISKAFELGLVAGLGHQEFARPSRGYL
AFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFY
GRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVA
SRTPELPPSARTTTFMLVGICLSIQSYY"
BASE COUNT 542 a 430 c 413 g 582 t
ORIGIN
1 ggtttcccct ggacgccttg ctcctgcttc tgctacgacc ttctggggaa aacgaatttc
61 tcattttctt cttaaattgc cattttcgct ttaggagatg aatgttttcc tttggctgtt
121 ttggcaatga ctctgaatta aagcgatgct aacgcctctt ttccccctaa ttgttaaaag
181 ctatggactg caggaagatg gcccgcttct cttacagtgt gatttggatc atggccattt
241 ctaaagcctt tgaactggga ttagttgccg ggctgggcca tcaggaattt gctcgtccat
301 ctcggggata cctggccttc agagatgaca gcatttggcc ccaggaggag cctgcaattc
361 ggcctcggtc ttcccagcgt gtgccgccca tggggataca gcacagtaag gagctaaaca
421 gaacctgctg cctgaatggg ggaacctgca tgctggggtc cttttgtgcc tgccctccct
481 ccttctacgg acggaactgt gagcacgatg tgcgcaaaga gaactgtggg tctgtgcccc
541 atgacacctg gctgcccaag aagtgttccc tgtgtaaatg ctggcacggt cagctccgct
601 gctttcctca ggcatttcta cccggctgtg atggccttgt gatggatgag cacctcgtgg
661 cttccaggac tccagaacta ccaccgtctg cacgtactac cacttttatg ctagttggca
721 tctgcctttc tatacaaagc tactattaat cgacattgac ctatttccag aaatacaatt
781 ttagatatca tgcaaatttc atgaccagta aaggctgctg ctacaatgtc ctaactgaaa
841 gatgatcatt tgtagttgcc ttaaaataat gaatacattt ccaaaatggt ctctaacatt
901 tccttacaga actacttctt acttctttgc cctgccctct cccaaaaaac tacttctttt
961 ttcaaaagaa agtcagccat atctccattg tgcctaagtc cagtgtttct tttttttttt
1021 tttttttgag acggagtctc actctgtcac ccaggctgga ctgcaatgac gcgatcttgg
1081 ttcactgcaa cctccgcatc cggggttcaa gccattctcc tgcctcagcc tcccaagtaa
1141 ctgggattac aggcatgtgt caccatgccc agctaatttt tttgtatttt agtagagatg
1201 ggggtttcac catattggcc agtctggtct cgaactcctg accttgtgat ccactcgcct
1261 cagcctctcg aagtgctgag attacacacg tgagcaactg tgcaaggcct ggtgtttctt
1321 gatacatgta attctaccaa ggtcttctta atatgttctt ttaaatgatt gaattatatg
1381 ttcagattat tggagactaa ttctaatgtg gaccttagaa tacagttttg agtagagttg
1441 atcaaaatca attaaaatag tctctttaaa aggaaagaaa acatctttaa ggggaggaac
1501 cagagtgctg aaggaatgga agtccatctg cgtgtgtgca gggagactgg gtaggaaaga
1561 ggaagcaaat agaagagaga ggttgaaaaa caaaatgggt tacttgattg gtgattaggt
1621 ggtggtagag aagcaagtaa aaaggctaaa tggaagggca agttcccatc atctatagaa
1681 agctatataa gacaagaaat cccctttttt tcccaaaggc attataaaaa gaatgaagcc
1741 tccttagaaa aaaaattata cctcaatgtc cccaacaaga ttgcttaata aattgtgttt
1801 cctccaagct attcaattct tttaactgtt gtagaagaca aaatgttcac aatatattta
1861 gttgtaaacc aagtgatcaa actacatatt gtaaagccca tttttaaaat acattgtata
1921 tatgtgtatg cacagtaaaa atggaaacta taaaaaaaaa aaaaaaa
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