LOCUS BC067778 1501 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens regulatory factor X, 3 (influences HLA class II
expression), mRNA (cDNA clone MGC:87155 IMAGE:5295394), complete
cds.
ACCESSION BC067778
VERSION BC067778.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1501)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1501)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19743882.
FEATURES Location/Qualifiers
source 1..1501
/db_xref="H-InvDB:HIT000262746"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87155 IMAGE:5295394"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1501
/gene="RFX3"
/gene_synonym="bA32F11.1"
/db_xref="GeneID:5991"
/db_xref="MIM:601337"
CDS 190..1431
/gene="RFX3"
/gene_synonym="bA32F11.1"
/codon_start=1
/product="RFX3 protein"
/protein_id="AAH67778.1"
/db_xref="GeneID:5991"
/db_xref="MIM:601337"
/translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQ
TVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQ
VTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIE
MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLD
PVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQ
QPMQQKQRYKPMQKVDGVADGFTGSGQQTGTSVGQTVIAQSQHHQQFLDASRALPEFG
EVEISSLPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPT
DGTTITESRSESTSFPIHFHG"
BASE COUNT 481 a 345 c 331 g 344 t
ORIGIN
1 tacttctgct tccactacaa acagtacttt aaagacaggc cttccactgc cattcagaaa
61 gcagccatgg aggatactct agtttctttg ggaagataaa cactcaatct gctagttaag
121 agacaaagct caagagaaat aagctgaagc tgtaacctcc atttcaaact tgtggttctg
181 cagaccatca tgcagacatc agagactggg tcggacacag gctcgacagt gaccttacaa
241 acatctgtgg ctagtcaagc agcagtgcct acgcaggtgg tacagcaagt accagtacaa
301 caacaggtac agcaggtaca gactgtgcag caggtacaac atgtctatcc cgctcaggtg
361 cagtatgtgg aaggaagcga tactgtctat accaatggag caatccgaac aacaacgtat
421 ccttacacag agacacagat gtacagccaa aatactggag ggaattactt tgatactcaa
481 gggagttccg cccaggtgac taccgtggtc tcatcccaca gtatggtggg cactggtggg
541 attcagatgg gcgtcacagg aggacaactc atcagcagct ctggaggaac ctatctgatc
601 ggcaactcaa tggagaattc tggtcactca gtgacacaca caactcgggc ctccccagcg
661 acaattgaaa tggcgattga gacgctgcaa aagtctgacg gtctgtccac tcacagaagc
721 tctcttctca acagccatct ccagtggctg ttggacaatt atgagacagc agaaggagtg
781 agccttccca gaagcactct gtacaaccac taccttcgac actgtcagga acacaaactg
841 gacccagtca atgctgcctc ttttggaaaa ttaataagat caatttttat ggggctacga
901 accaggagat tgggcactag aggaaactcc aaataccact actatgggat tcgtgtcaag
961 ccagattccc ctcttaatcg tctgcaagaa gacatgcagt atatggctat gagacaacaa
1021 cccatgcaac agaaacaaag gtacaagcct atgcagaaag tggatggggt tgcagatggt
1081 ttcacaggaa gtggtcaaca gacaggcaca tctgttgggc aaactgtaat tgcccaaagc
1141 caacatcatc aacagttttt agatgcatct cgagcacttc cagagtttgg agaagttgag
1201 atctcttctc tgccagatgg tactaccttt gaggatatca agtcactgca gagtctttat
1261 agagagcact gtgaggcaat attggacgtt gttgtgaatc ttcaatttag cctgatagaa
1321 aaattgtggc aaacattctg gcgctattct ccctctactc caactgatgg cactaccatt
1381 accgaatcga ggtcagaatc aacatctttt ccaattcatt ttcatggctg agtagatgtc
1441 acaactaata aattagagat atgtaaaaaa aaaaaaaaaa aaaaaagaaa aaaaaaaaaa
1501 a
//