LOCUS BC067131 2751 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
MGC:70403 IMAGE:6153778), complete cds.
ACCESSION BC067131
VERSION BC067131.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2751)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2751)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46048189.
FEATURES Location/Qualifiers
source 1..2751
/db_xref="H-InvDB:HIT000262464"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70403 IMAGE:6153778"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2751
/gene="RDH10"
/db_xref="GeneID:157506"
/db_xref="HGNC:HGNC:19975"
/db_xref="MIM:607599"
CDS 189..1214
/gene="RDH10"
/codon_start=1
/product="retinol dehydrogenase 10 (all-trans)"
/protein_id="AAH67131.1"
/db_xref="GeneID:157506"
/db_xref="HGNC:HGNC:19975"
/db_xref="MIM:607599"
/translation="MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGA
GSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEAADAAALQAGNGEE
EILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDE
LIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVV
GFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQA
MKAILTDQPMICTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPFIAQRKQATNN
NEAKNGI"
BASE COUNT 696 a 582 c 665 g 808 t
ORIGIN
1 gtggccccgc gcaggcaggg agcggcgccg cgcactccaa cccggcgggc acctcggggg
61 cgggcgcggg gcgcagcctt ctcgtcccgg cctctgtgac aagcgccccg gagccgggag
121 cccgattgcc gggctcgggg tgggcgcgga cgcaggcact gggctcgtgc ggggccccgg
181 gcgtcgcgat gaacatcgtg gtggagttct tcgtggtcac tttcaaagtg ctctgggcgt
241 tcgtgctggc cgcggcgcgc tggctggtgc ggcccaagga gaagagcgtg gcgggccagg
301 tgtgcctcat caccggcgcc ggcagcggcc tgggccgcct cttcgcgctg gagttcgccc
361 ggcgtcgggc gctgctggtg ctgtgggaca tcaacacgca aagcaacgag gagacggctg
421 gcatggtgcg ccacatctac cgcgacctgg aggcggccga cgccgctgcg ctgcaagctg
481 ggaatggtga ggaagaaatt ctgccccact gtaacttgca ggtttttacc tacacctgtg
541 acgtggggaa gagggagaac gtctacctga cggctgaaag agtccgcaag gaggttggcg
601 aagtctcagt cctggtcaat aatgctggtg tggtctctgg gcatcacctt ctggaatgtc
661 ctgatgagct cattgagaga accatgatgg tcaattgcca tgcacacttc tggaccacta
721 aggcttttct tcctacgatg ctggagatta atcatggtca tattgtgaca gttgcaagtt
781 ccttgggatt gttcagtact gccggagttg aggattactg tgccagtaaa tttggagttg
841 tgggttttca tgaatccctg agccatgaac taaaggctgc tgaaaaggat ggaattaaaa
901 caaccttggt ttgcccttat cttgtagaca ctggcatgtt cagaggctgc cgaatcagga
961 aagaaattga gccttttctg ccacctctga agcctgatta ctgtgtgaag caggccatga
1021 aggccatcct cactgaccag cccatgatct gcactccccg cctcatgtac atcgtgacct
1081 tcatgaagag catcctacca tttgaagcag ttgtgtgcat gtatcggttc ctaggagcgg
1141 acaagtgtat gtaccccttt attgctcaaa gaaagcaagc cacaaacaat aatgaagcaa
1201 aaaatggaat ctaagaatct ttttgtatgg aatattactt ctatcagaag atgatcaaga
1261 tgtttcagtc cagtgcacat cagcattgct gacattttat ggattctaaa cttgtgttgt
1321 ttctttttta aatcaacttt ttaaaaaaat aaagtgtaaa ttaaccgact agagtacttg
1381 gaaaatgtga tcagtacaag tgaacttagg ttgttgccaa cagggtcctt ttaggcagaa
1441 cccagaaacc agtcaaatct gtagagaagc agtgtgacat cttcaggtta ccattatttt
1501 ttaatgagca ggaagtctag aaatgataac tagactgtat gtttcatgtg tgtgattttt
1561 cagaattccc agagtttact cattcttgtt attaaactct agccagttga catcttcgca
1621 atttcaagga ctgatagtgc tgtattttct cacgttttct aagtttccgt tttgcaaggc
1681 ctaggtgact ttttcatggt gtttgtatgt ttagctcttt tgaaaaggaa ttttgaaatc
1741 tccatcaact gaagtaaatg atgtctgagt gttacagtaa aggtgaccaa gtctctttct
1801 taaagtcaca atgactaaag tattagttga attttttttt tttttttttt ttgatggagt
1861 ctcgctctgt caccaggctg gagtgcagta gcacaatcac ggctcactgc aatctctgcc
1921 tcccggtttc aagtgattct gctgtctcag cctcccaagt agctgggact acaggcatgc
1981 gccaccacgc ccagctaatt tttgtatttt tagtagagac ggggtttcac catgttggtc
2041 aggatggtct ccatctcttg acattgtgat ccacctgcct cggcctccca aagtgctggg
2101 attacaggca tgagccactg cacccagcct tgaattttta attttatctc tgatatactt
2161 cattaagtgt ctggagacct aattatccta aaagatcata cattttctac ctatgaattt
2221 tgctgcatac agaaagtgcc ctttcctcag gaagttgctg tgtttcattt ctttggatgg
2281 actcttatct agaatacata gcagctctgc aaagaaacag tttttaaaaa tgggaacttc
2341 tacattgaaa agtccccatt tttgtgccaa ctatgattag tgagaggaag aaatcttatt
2401 ctatggcata tgtatggaag ggtgtaaaga ttcttttgaa aggtttattc acattgtaga
2461 acagcaaatg acatttttac agtatttttt tgtaaagcaa actattttgt gccttgaatt
2521 tggtatatgt gtattagtga aacattgtaa aggtgaactt ctacctctgt atctaaatgt
2581 ataccatcca cttgtaaatg actataaact attatgtgat tgcttttttt tttagaatgt
2641 cttgtttaaa tagtggccaa tgtttaaggc tgttaaaata agccaacttt tactaattgg
2701 ggagttttat aaatgactga ttaaatttaa agaattaaaa aaaaaaaaaa a
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