LOCUS BC067120 4490 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens protein tyrosine phosphatase domain containing 1, mRNA (cDNA clone MGC:70358 IMAGE:5539182), complete cds. ACCESSION BC067120 VERSION BC067120.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4490) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4490) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 139 Row: a Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 30089949. FEATURES Location/Qualifiers source 1..4490 /db_xref="H-InvDB:HIT000262453" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:70358 IMAGE:5539182" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4490 /gene="PTPDC1" /gene_synonym="PTP9Q22" /db_xref="GeneID:138639" /db_xref="HGNC:HGNC:30184" CDS 326..2590 /gene="PTPDC1" /gene_synonym="PTP9Q22" /codon_start=1 /product="protein tyrosine phosphatase domain containing 1" /protein_id="AAH67120.1" /db_xref="GeneID:138639" /db_xref="HGNC:HGNC:30184" /translation="MAAGVLPQNEQPYSTLVNNSECVANMKGNLERPTPKYTKVGERL RHVIPGHMACSMACGGRACKYENPARWSEQEQAIKGVYSSWVTDNILAMARPSSELLE KYHIIDQFLSHGIKTIINLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYNFGWK DYGVASLTTILDMVKVMTFALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAII FVRAKRPNSIQTRGQLLCVREFTQFLTPLRNIFSCCDPKAHAVTLPQYLIRQRHLLHG YEARLLKHVPKIIHLVCKLLLDLAENRPVMMKDVSEGPGLSAEIEKTMSEMVTMQLDK ELLRHDSDFSNPPNPTAVAADFDNRGMIFSNEQQFDPLWKRRNVECLQPLTHLKRRLS YSDSDLKRAENLLEQGETPQTVPAQILVGHKPRQQKLISHCYIPQSPEPDLHKEALVR STLSFWSQSKFGGLEGLKDNGSPIFHGRIIPKEAQQSGAFSADVSGSHSPGEPVSPSF ANVHKDPNPAHQQVSHCQCKTHGVGSPGSVRQNSRTPRSPLDCGSSPKAQFLVEHETQ DSKDLSEAASHSALQSELSAEARRILAAKALANLNESVEKEELKRKVEMWQKELNSRD GAWERICGERDPFILCSLMWSWVEQLKEPVITKEDVDMLVDRRADAAEALFLLEKGQH QTILCVLHCIVNLQTIPVDVEEAFLAHAIKAFTKVNFDSENGPTVYNTLKKIFKHTLE EKRKMTKDGPKPGL" BASE COUNT 1256 a 986 c 1049 g 1199 t ORIGIN 1 gggcagcgcc ggggacgcgg cctcagcagg ggcgccccgc cacggggagc agcccaggcg 61 ctcgccccag gacgttgtcc ggcgggctgg gctgggaccc ctctgcctcc agggcgcgtc 121 gggagcagca gggatcggtg ccgcgccgtg agggtgcgca gaggctgccc tcgggcccgc 181 tacccacaga ccctccgcgg ggcagcgtct ccgggccggc cgcgccctgg tccgccgacc 241 gcagacgact tgtgacacgg acggcgcgtc ctgctgaccc cagccggcgc cgagggcttg 301 gaatctcgag cgggaaaaga ctaccatggc tgcaggagtc ttgcctcaga atgaacaacc 361 atattctacc ttggtgaata acagcgagtg tgttgcaaac atgaaaggaa atttagaacg 421 tccaacacca aagtacacaa aagtagggga gcgtttacgg catgtcattc ctggacacat 481 ggcatgttcc atggcgtgtg gcggtagagc ttgcaagtat gagaacccag cccgctggag 541 tgagcaggag caagccatta agggggttta ctcatcctgg gtcactgata atatactggc 601 catggcccgc ccatcctctg agctcctgga gaagtaccac atcattgatc agttcctcag 661 ccatggcata aaaacaataa tcaacctcca gcgccctggt gagcatgcta gctgtgggaa 721 ccctctggaa caagaaagtg gcttcacata ccttcctgag gctttcatgg aggctggcat 781 ttacttctac aatttcggat ggaaggatta tggtgtagcg tctcttacta ctatcctaga 841 tatggtgaag gtgatgacat ttgccttaca ggaaggaaaa gtagctatcc attgtcatgc 901 agggcttggt cgaacaggtg ttttaatagc ctgttactta gtttttgcaa cgagaatgac 961 tgctgaccaa gcaattatat ttgtgcgggc aaagcgaccc aattccatac aaaccagagg 1021 acagctcctc tgtgtaaggg aatttactca gtttctaact cctctccgca atatattctc 1081 ttgctgtgat cccaaagcac atgctgtcac cttacctcaa tatctaattc gccagcgtca 1141 tctgcttcat ggttatgagg cacgacttct gaaacacgtg ccaaaaatta tccacctagt 1201 ttgcaaattg ctgctggact tagcggagaa caggccagtg atgatgaagg atgtgtccga 1261 aggacctggt ctctctgctg aaatagaaaa gacaatgtct gagatggtca ccatgcagct 1321 ggataaagag ttactgaggc atgacagtga tttttccaac ccgcctaacc ccactgcagt 1381 ggcagcagat tttgacaatc gaggcatgat tttctccaat gagcaacagt ttgaccctct 1441 ttggaaaagg cggaatgttg agtgccttca acccctgact catctgaaaa ggcggctcag 1501 ctacagtgac tcagatttaa agagggccga gaacctcctg gagcaagggg agactccaca 1561 gacagtgcct gcccagatct tggttggcca caagcccagg cagcagaagc tcataagcca 1621 ttgttacatc ccacagtctc cagaaccaga cttacacaag gaagccttgg ttcgcagcac 1681 actttctttc tggagtcagt caaagtttgg aggcctggaa ggactcaaag ataatgggtc 1741 accaattttc catggaagga tcattccaaa ggaagcacag cagagtggag ctttctctgc 1801 agatgtttca ggctcacaca gccctgggga gccagtttca cccagctttg caaatgtcca 1861 taaggatcca aaccctgctc accagcaagt gtctcactgt cagtgtaaaa ctcatggtgt 1921 tgggagccct ggctctgtca ggcagaacag caggacaccc cgaagccctc tggactgtgg 1981 ctccagtccc aaagcacagt tcttggttga acatgaaacc caggacagta aagatctgtc 2041 tgaagcagct tcacactctg cattacagtc tgaattgagt gctgaggcaa gaagaatact 2101 ggcggccaaa gccctagcaa atttaaatga atctgtagaa aaggaggaac taaaaaggaa 2161 ggtagaaatg tggcagaaag agcttaattc ccgagatgga gcttgggaaa gaatatgtgg 2221 cgagagggac cctttcatcc tatgcagctt gatgtggtct tgggtggagc aactgaagga 2281 gcctgtaatc accaaagagg atgtggacat gttggttgac aggcgagcag atgccgcaga 2341 agcacttttt ttattagaga agggacagca ccagactatt ctctgcgtgt tgcactgcat 2401 agtgaacctg cagacaattc ccgtggatgt ggaggaagct ttccttgccc atgccattaa 2461 ggcattcact aaggttaatt ttgattctga aaatggacca acagtttaca acaccctgaa 2521 gaaaatattt aagcacacgc tggaagaaaa aagaaaaatg acaaaagatg gccctaagcc 2581 tggcctctag ctttcactcg tggtgaatat ttcagaccta aagatccaga tagtatctct 2641 gttcatatgt gaataagttg aagattgtgg ggctactttt tctcatagca ctttattttg 2701 aatgttgtta gtttgtgctg agaatggtcg tccgtatttg aaccaattat ttattttaaa 2761 atatatttaa gctacatttt tgttttgaaa aattgccata aatttggtgc cactttcttt 2821 tatttatttg actgagttaa tattattgta ttaacatttt aagtatatgg tgtttacatt 2881 cttatttctt ttgacatttt ggaaataatc ataacttgtc tttccaaaat aaccattttc 2941 ttgatggaac tcttcctaga gtttttacca aatagctaac tttagtagta aaacctcatt 3001 gtgtatccat tcccccacag atgaactaag aaagtcacca agtgtcttaa gctgttttat 3061 atttgttacg aagaaggcta ttgctacaat atttttaaag gtttcttttt taactttgaa 3121 attttttgtt tttccttttc tttttataaa tgtaacagag ggtttcaaag catattattt 3181 ttcagagaga tttagtttta ctttaatgga gtgactgtga agtggttggg attttttgct 3241 tgtagaaagt agacttgctc tttgtcagat ttccaaacaa ccttgccagc cttggctgtc 3301 aaaaggaggc aggagcagtt ctcaacacac caagccttat tcccactccc ttgggttgct 3361 gctgagccaa atagcatctt tacagaggaa gtgggatcag aggcaggaag tgtggaaagt 3421 tgctaagaag cagggcttgc ctctgtcctc ccggggactc cacagggata ttcgtgcagg 3481 gcaggggctc tgtgccagcc ctgctctctc agatgccaca gccactctgc agaggtgact 3541 cttggagctg gaggaagtca aaactgggcc actgtttgta ctgatggtgt attagcatga 3601 gcagcgtggc cctggcccca cactcccaaa tctgccactc catagaccca cttgcctcaa 3661 ggctttatat ttggctgctt tcttacaatg agaattaaga tttttaaact gaagttgacc 3721 atacaggttg cattagccct aactggcttc atgtaagaag ggtgactgcc taaactagtt 3781 ccttgtaagc tgaaccatca attatcagtt gaagccatac ttttatttaa attaatatac 3841 gtagatacca gaggccaagc cacagagagg ataatagttc ttcccaataa aggtgatatt 3901 aatcagacta atttcgaact aaagaagtta ctgcttaaag acggaatttc aggggaagca 3961 agactcattt agaacaaatg aaatttctcc agtcctacat ttctgaattg acttctagca 4021 catcaaaaat atttcagtca ttatcagtct cattaactga aatgccaaat gctaaatgca 4081 gtgttctttc acactgtttt aattttcttg ggaaattgag tccagtggat gttaatggag 4141 tgggttgccc atccctgaaa tgtcttattt tcaagtgcct ggcctgggaa agaaggggaa 4201 gaaacaattg cattatatcc aaagatacac tataaaaata gagtttttac caaaaaaaga 4261 tgtttgttct catctcagta ggcctcattt gggcaagtga cccacaggtc ttttggcgag 4321 tttgctattt gcctgttgaa atacttgttt caacttagag aacagttatg atgtgaccat 4381 agcatggcac aactaaaaat ctaagcctga aacctgaaaa aagagatatg acaagggaaa 4441 ttaatcaggc tatacataag tattgtattt atttgaaaaa aaaaaaaaaa //