LOCUS BC067096 2920 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 16, mRNA (cDNA clone
MGC:71281 IMAGE:6088764), complete cds.
ACCESSION BC067096
VERSION BC067096.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2920)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2920)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255912.
FEATURES Location/Qualifiers
source 1..2920
/db_xref="H-InvDB:HIT000262431"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71281 IMAGE:6088764"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2920
/gene="TRIM16"
/gene_synonym="EBBP"
/db_xref="GeneID:10626"
/db_xref="HGNC:HGNC:17241"
/db_xref="MIM:609505"
CDS 558..2252
/gene="TRIM16"
/gene_synonym="EBBP"
/codon_start=1
/product="tripartite motif-containing 16"
/protein_id="AAH67096.1"
/db_xref="GeneID:10626"
/db_xref="HGNC:HGNC:17241"
/db_xref="MIM:609505"
/translation="MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEED
VGSSEKLGRETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCE
EHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGH
TIVSLDAARRDKEAELQCTQLDLERKLKLNENAISRLQANQKSVLVSVSEVKAVAEMQ
FGELLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELERMAAIS
NTVQFLEEYCKFKNTEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQE
FSKEEEYDIRTQVSAVVQRKYWTSKPEPSTREQFLQYAYDITFDPDTAHKYLRLQEEN
RKVTNTTPWEHPYPDLPSRFLHWRQVLSQQSLYLHRYYFEVEIFGAGTYVGLTCKGID
RKGEERNSCISGNNFSWSLQWNGKEFTAWYSDMETPLKAGPFRRLGVYIDFPGGILSF
YGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAPSLVVTAP"
BASE COUNT 725 a 757 c 793 g 645 t
ORIGIN
1 gatttatgga aagcacctgg tgcgtgttct gccctctgag gaccctgccc tttcccaaaa
61 ggggtatctt aagaaggaaa atatggctgc tctttgccgg acagcagagt cccagtagga
121 tttccatttt ccaaacctgg tatcatctcc tagttggaag aagtggtaag cccacgaaca
181 caaatgcagg agggagaggt gccaagaagc agcggtacac agcaggcaca gagacacgtg
241 gtcttcagca gagcctatgg ggttcagatg attcacataa gaatagaagt ttcagggctg
301 gacctgggga ggcagcctga gcctgagccg gctgtcctga gcctgagtac tctagctgcc
361 ttgtcgtcat cgcatctggc tgccatccag cgccagcaca cagtaatgag tggccgagct
421 tcctctggga gggaggaaac agttaaaatc ttgcagcagc tgcaatcatc taggcgtggt
481 tctcttgtct gacttgggct gcacagatcc tgggccaagg gacagaagaa agacagccta
541 ggagcagagc ctcccagatg gctgagttgg atctaatggc tccagggcca ctgcccaggg
601 ccactgctca gcccccagcc cctctcagcc cagactctgg gtcacccagc ccagattctg
661 ggtcagccag cccagtggaa gaagaggacg tgggctcctc ggagaagctt ggcagggaga
721 cggaggaaca ggacagcgac tctgcagagc agggggatcc tgctggtgag gggaaagagg
781 tcctgtgtga cttctgcctt gatgacacca gaagagtgaa ggcagtgaag tcctgtctaa
841 cctgcatggt gaattactgt gaagagcact tgcagccgca tcaggtgaac atcaaactgc
901 aaagccacct gctgaccgag ccagtgaagg accacaactg gcgatactgc cctgcccacc
961 acagcccact gtctgccttc tgctgccctg atcagcagtg catctgccag gactgttgcc
1021 aggagcacag tggccacacc atagtctccc tggatgcagc ccgcagggac aaggaggctg
1081 aactccagtg cacccagtta gacttggagc ggaaactcaa gttgaatgaa aatgccatct
1141 ccaggctcca ggctaaccaa aagtctgttc tggtgtcggt gtcagaggtc aaagcggtgg
1201 ctgaaatgca gtttggggaa ctccttgctg ctgtgaggaa ggcccaggcc aatgtgatgc
1261 tcttcttaga ggagaaggag caagctgcgc tgagccaggc caacggtatc aaggcccacc
1321 tggagtacag gagtgccgag atggagaaga gcaagcagga gctggagagg atggcggcca
1381 tcagcaacac tgtccagttc ttggaggagt actgcaagtt taagaacact gaagacatca
1441 ccttccctag tgtttacgta gggctgaagg ataaactctc gggcatccgc aaagttatca
1501 cggaatccac tgtacactta atccagttgc tggagaacta taagaaaaag ctccaggagt
1561 tttccaagga agaggagtat gacatcagaa ctcaagtgtc tgccgttgtt cagcgcaaat
1621 attggacttc caaacctgag cccagcacca gggaacagtt cctccaatat gcgtatgaca
1681 tcacgtttga cccggacaca gcacacaagt atctccggct gcaggaggag aaccgcaagg
1741 tcaccaacac cacgccctgg gagcatccct acccggacct ccccagcagg ttcctgcact
1801 ggcggcaggt gctgtcccag cagagtctgt acctgcacag gtactatttt gaggtggaga
1861 tcttcggggc aggcacctat gttggcctga cctgcaaagg catcgaccgg aaaggggagg
1921 agcgcaacag ttgcatttcc ggaaacaact tctcctggag cctccaatgg aacgggaagg
1981 agttcacggc ctggtacagt gacatggaga ccccactcaa agctggccct ttccggaggc
2041 tcggggtcta tatcgacttc ccgggaggga tcctttcctt ctatggcgta gagtatgata
2101 ccatgactct ggttcacaag tttgcctgca aattttcaga accagtctat gctgccttct
2161 ggctttccaa gaaggaaaac gccatccgga ttgtagatct gggagaggaa cccgagaagc
2221 cagcaccgtc cttggtggtg actgctccct agactccagg agccatatcc cagacctttg
2281 ccagctacag tgatgggatt tgcattttag ggtgatttgg gggcagaaat aactgctgat
2341 ggtagctggc ttttgaaatc ctatggggtc tctgaatgaa aacattctcc agctgctctc
2401 ttttgctcca tatggtgctg ttctctatgt gtttgcagta attctttttt ttttttttga
2461 gacggagtct cgcactgttg cccaggctgg agagcagtgg cgcgatcttg gctcactgca
2521 agctccgcct cccgagttca agcaattctc ctgcctcagc ctcccgagta gctgggatta
2581 caggtgcctg ccaccacacc cagctaatgt tttgtatttt tagtagagat ggggtttcac
2641 catgttggcc aggcagatct caaactcctg acctcgtgat gcacccacct cggcctccca
2701 aagtgctggg attacatgcg tgagccactg cgccctgcct gtttgtagta atttttaggc
2761 accaaatctc cctcatcttc tagtgccatt ctcctctctg ttcaggtaaa tgtcacactg
2821 tgcccagaat ggatgaccag gaaccttaaa gagtggctga aaagattgca gagttatcat
2881 aataaattgc taacttgcgt aaaaaaaaaa aaaaaaaaaa
//