LOCUS BC066956 1938 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens vimentin, mRNA (cDNA clone MGC:87432 IMAGE:4823475),
complete cds.
ACCESSION BC066956
VERSION BC066956.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: f Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62414288.
FEATURES Location/Qualifiers
source 1..1938
/db_xref="H-InvDB:HIT000262376"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87432 IMAGE:4823475"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1938
/gene="VIM"
/db_xref="GeneID:7431"
/db_xref="HGNC:HGNC:12692"
/db_xref="MIM:193060"
CDS 202..1602
/gene="VIM"
/codon_start=1
/product="vimentin"
/protein_id="AAH66956.1"
/db_xref="GeneID:7431"
/db_xref="HGNC:HGNC:12692"
/db_xref="MIM:193060"
/translation="MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSAL
RPSTSRSLYASSPGGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTN
EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQ
VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARL
DLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQY
ESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALK
GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA
LDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETR
DGQVINETSQHHDDLE"
BASE COUNT 518 a 554 c 486 g 380 t
ORIGIN
1 aacggtttcc cctaaaccgc taggagccct caatcggcgg gacagcaggg cgcgtcctct
61 gccactctcg ctccgaggtc cccgcgccag agacgcagcc gcgctcccac cacccacacc
121 caccgcgccc tcgttcgcct cttctccggg agccagtccg cgccaccgcc gccgcccagc
181 ccatcgccac cctccgcagc catgtccacc aggtccgtgt cctcgtcctc ctaccgcagg
241 atgttcggcg gcccgggcac cgcgagccgg ccgagctcca gccggagcta cgtgactacg
301 tccacccgca cctacagcct gggcagcgcg ctgcgcccca gcaccagccg cagcctctac
361 gcctcgtccc cgggcggcgt gtatgccacg cgctcctctg ccgtgcgcct gcggagcagc
421 gtgcccgggg tgcggctcct gcaggactcg gtggacttct cgctggccga cgccatcaac
481 accgagttca agaacacccg caccaacgag aaggtggagc tgcaggagct gaatgaccgc
541 ttcgccaact acatcgacaa ggtgcgcttc ctggagcagc agaataagat cctgctggcc
601 gagctcgagc agctcaaggg ccaaggcaag tcgcgcctgg gggacctcta cgaggaggag
661 atgcgggagc tgcgccggca ggtggaccag ctaaccaacg acaaagcccg cgtcgaggtg
721 gagcgcgaca acctggccga ggacatcatg cgcctccggg agaaattgca ggaggagatg
781 cttcagagag aggaagccga aaacaccctg caatctttca gacaggatgt tgacaatgcg
841 tctctggcac gtcttgacct tgaacgcaaa gtggaatctt tgcaagaaga gattgccttt
901 ttgaagaaac tccacgaaga ggaaatccag gagctgcagg ctcagattca ggaacagcat
961 gtccaaatcg atgtggatgt ttccaagcct gacctcacgg ctgccctgcg tgacgtacgt
1021 cagcaatatg aaagtgtggc tgccaagaac ctgcaggagg cagaagaatg gtacaaatcc
1081 aagtttgctg acctctctga ggctgccaac cggaacaatg acgccctgcg ccaggcaaag
1141 caggagtcca ctgagtaccg gagacaggtg cagtccctca cctgtgaagt ggatgccctt
1201 aaaggaacca atgagtccct ggaacgccag atgcgtgaaa tggaagagaa ctttgccgtt
1261 gaagctgcta actaccaaga cactattggc cgcctgcagg atgagattca gaatatgaag
1321 gaggaaatgg ctcgtcacct tcgtgaatac caagacctgc tcaatgttaa gatggccctt
1381 gacattgaga ttgccaccta caggaagctg ctggaaggcg aggagagcag gatttctctg
1441 cctcttccaa acttttcctc cctgaacctg agggaaacta atctggattc actccctctg
1501 gttgataccc actcaaaaag gacacttctg attaagacgg ttgaaactag agatggacag
1561 gttatcaacg aaacttctca gcatcacgat gaccttgaat aaaaattgca cacactcagt
1621 gcagcaatat attaccagca agaataaaaa agaaatccat atcttaaaga aacagctttc
1681 aagtgccttt ctgcagtttt tcaggagcgc aagatagatt tggaatagga ataagctcta
1741 gttcttaaca accgacactc ctacaagatt tagaaaaaag tttacaacat aatctagttt
1801 acagaaaaat cttgtgctag aatacttttt aaaaggtatt ttgaatacca ttaaaactgc
1861 tttttttttt ccagcaagta tccaaccaac ttgtttctgc ttcaataaat ctttggaaaa
1921 actaaaaaaa aaaaaaaa
//