LOCUS BC066939 1595 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens immunity-related GTPase family, cinema, mRNA (cDNA
clone MGC:87288 IMAGE:4826064), complete cds.
ACCESSION BC066939
VERSION BC066939.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1595)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1595)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: g Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45433541.
FEATURES Location/Qualifiers
source 1..1595
/db_xref="H-InvDB:HIT000262360"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87288 IMAGE:4826064"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1595
/gene="IRGC"
/gene_synonym="CINEMA"
/gene_synonym="Iigp5"
/gene_synonym="R30953_1"
/db_xref="GeneID:56269"
/db_xref="HGNC:HGNC:28835"
CDS 124..1515
/gene="IRGC"
/gene_synonym="CINEMA"
/gene_synonym="Iigp5"
/gene_synonym="R30953_1"
/codon_start=1
/product="immunity-related GTPase family, cinema"
/protein_id="AAH66939.1"
/db_xref="GeneID:56269"
/db_xref="HGNC:HGNC:28835"
/translation="MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQ
ELLASTESIRLEVGVTGESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHP
QFPDVTLWDLPGAGSPGCPADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQG
KKFYFVRTKVDEDLAATRTQRPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNL
SPARYDFPTLVSTWEHDLPSHRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGV
IQALPVPGLAAAYDDALLIHSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPL
ANEVSPETVLRLYSQSSDGAMRVARAFERGIPVFGTLVAGGISFGAVYTMLQGCLNEM
AEDAQRVRIKALEDDEPQPEVSLEVASDNGVEKGGSGEGGGEEAPLSTCRKLGLLLKY
ILDSWKKHDSEEK"
BASE COUNT 306 a 526 c 492 g 271 t
ORIGIN
1 gaaggagatc ctatcagtgg ggagagtgtg aggggagagg gagagcctgc agggcaggcg
61 ctgaggatca cgcatcctgt gactctcccc tgtcccccgc caccctctga accactggcc
121 accatggcta cttcaaagtt gcccgtggtg cctggggagg aggaaaacac catccttatg
181 gccaaggaaa ggctggaggc cctgcgcaca gcctttgagt cgggtgacct cccccaggcc
241 gcctctcacc tccaggagct gctggcctcc acggaaagca tccgcctgga ggtgggcgtc
301 acgggcgagt cgggcgcggg caagtcctcc ctcatcaatg ccctgcgtgg cctggaggcc
361 gaggaccctg gcgcggctct cacgggcgtc atggagacca cgatgcaacc gtcgccctat
421 ccacacccac agttccctga cgtgaccctc tgggacctgc caggagccgg ctctccaggc
481 tgcccggctg acaagtacct aaagcaggta gacttcagcc gctatgactt cttcctgctg
541 gtctcccccc gccgctgcgg ggccgtcgag acccgcctgg ccgctgagat cctgtgccag
601 ggcaagaagt tctactttgt gcgcaccaag gtggacgagg acctggcggc cacgcgcacc
661 cagcggccgt cgggcttcag agaggccgct gtcctgcagg agatccgaga ccactgtgcc
721 gagcggctgc gggaggccgg cgtggctgac cctcgcatct tcctggtgtc caacctctcg
781 ccggcccgct acgactttcc cacgctggtg tccacctggg agcacgacct gccctcccac
841 cggcgccacg ctggcctgct gtcgctcccc gacatctcgc tggaggcctt gcagaagaag
901 aaggccatgc ttcaagagca agtcctcaag accgccctgg tgttgggcgt catccaggcc
961 ctgccggtcc cagggctggc ggccgcctac gatgatgcgt tgctcatcca ctcactgcgt
1021 ggctaccacc gcagctttgg tctggacgac gactcgctgg ccaagctggc cgagcaggtg
1081 ggcaaacagg caggtgacct gcgctcggtc atccgctccc cactggccaa cgaggtctcg
1141 cctgagactg tcctgcggct ctattcccag tcgtccgacg gcgccatgcg ggtggcccgc
1201 gcctttgaga ggggcatccc tgtgtttggg acgctggtgg ctggcggcat cagctttggc
1261 gctgtctaca ccatgctcca gggctgcctc aacgagatgg ctgaggacgc ccagcgtgtc
1321 cgcatcaagg ccctggagga tgacgagccg cagccggagg tcagcttgga agtggccagt
1381 gacaatggcg tggaaaaggg gggctccggg gagggaggtg gggaggaagc cccactctca
1441 acctgcagga agctcggcct ccttcttaag tacattctgg acagctggaa gaaacacgac
1501 tcagaagaga aataaagagt gcagccccgc ccccctgcct cacccacaaa ctaagtctta
1561 acaaaatcca aattaccaac aaaaaaaaaa aaaaa
//