LOCUS BC066353 1268 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens LIM homeobox transcription factor 1, alpha, mRNA (cDNA
clone IMAGE:4825854), complete cds.
ACCESSION BC066353
VERSION BC066353.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1268)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1268)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281894
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1268
/db_xref="H-InvDB:HIT000262244"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4825854"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1268
/gene="LMX1A"
/gene_synonym="LMX-1"
/gene_synonym="LMX1.1"
/db_xref="GeneID:4009"
/db_xref="HGNC:HGNC:6653"
/db_xref="MIM:600298"
CDS 481..783
/gene="LMX1A"
/gene_synonym="LMX-1"
/gene_synonym="LMX1.1"
/codon_start=1
/product="LIM homeobox transcription factor 1, alpha"
/protein_id="AAH66353.1"
/db_xref="GeneID:4009"
/db_xref="HGNC:HGNC:6653"
/db_xref="MIM:600298"
/translation="MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHM
HPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS"
BASE COUNT 333 a 295 c 315 g 325 t
ORIGIN
1 gagtttggct ttttccactt ggtgtggtgg tttggggatt cattcattcc tatttcagca
61 ttccactgta tagtccagag gtgagcaagg caaggctggt gggtggctct gttatccatc
121 tcctgtgtcc aagcgactgc tccagttgtc accatgtttc cagtcaccag gtgagagaga
181 ctctggctgc agagacaggg ctgagtgtcc gtgtcgtcca ggtgtggttc caaaaccaga
241 gagcgaagat gaagaagctg gccaggcgac agcagcagca gcagcaagat cagcagaaca
301 cccagaggct gagctctgat tggtgttctc atacatgctg acttgacttt tacaacaccc
361 attcctggag gcgagtggag aagttgttat tatccctatg tcacagatga gcaaacaaag
421 gctctgcaag attgaatgtg gccctagatc gctcagacaa acggtggtgg gagtgctggg
481 atggaaggaa tcatgaaccc ctacacggct ctgcccaccc cacagcagct cctggccatc
541 gagcagagtg tctacagctc agatcccttc cgacagggtc tcaccccacc ccagatgcct
601 ggagaccaca tgcaccctta tggtgccgag ccccttttcc atgacctgga tagcgacgac
661 acctccctca gtaacctggg tgactgtttc ctagcaacct cagaagctgg gcctctgcag
721 tccagagtgg gaaaccccat tgaccatctg tactccatgc agaattctta cttcacatct
781 tgagtcttcc cctagagttc tgtgactagg ctcccatatg gaacaaccat attctttgag
841 gggtcactgg ctttaggaca gggaggccag ggaagaggtg ggttggggag ggagttttgt
901 tggggatgct gttgtataat gatatggtgt agctcagcat ttccaaagac tgaatacatt
961 atggattgca tagtttaatg tttctaataa gagtcttagc attagatatg aagacgtgtt
1021 tatcattaag gacagagact tttaatatag acattctcat gcaaactaga tacttaggga
1081 ctcctaacaa cttcccacca tgtcggggaa gctcttgtca agaggtgcat atgtctatcc
1141 atctacacac caatagacag aaggacagat agatagatgt gtgtgtgtga gtgtgtaacc
1201 tttcgtattt taccctcaaa gtttattcct aattataaca gacaccaact gtaaaaaaaa
1261 aaaaaaaa
//