LOCUS BC065286 962 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens SNW domain containing 1, mRNA (cDNA clone
IMAGE:6015770), partial cds.
ACCESSION BC065286
VERSION BC065286.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 962)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 962)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860912.
FEATURES Location/Qualifiers
source 1..962
/db_xref="H-InvDB:HIT000261848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6015770"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>962
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="IMGT/GENE-DB:16696"
/db_xref="MIM:603055"
CDS 6..>962
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/codon_start=1
/product="SNW1 protein"
/protein_id="AAH65286.1"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="IMGT/GENE-DB:16696"
/db_xref="MIM:603055"
/translation="MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPY
GYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIA
RQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVA
AAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKI
PRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQ
TVHINGNFAKLAEALYIADRKAREAVEMRAQVERKMAQKKKKK"
BASE COUNT 321 a 209 c 230 g 202 t
ORIGIN
1 agaagatggc gctcaccagc tttttacctg cacctactca gctatctcag gaccagcttg
61 aggctgaaga aaaggcaaga tcccagagat cacggcagac ctcactggtc tcctcccgaa
121 gagaacctcc cccgtacgga taccggaaag gctggatacc tcggttatta gaggattttg
181 gagatggagg tgcttttcca gagatccatg tggcccagta tccactggat atgggacgaa
241 agaaaaaaat gtcgaatgcg ctggccattc aggtggattc tgaaggaaaa attaaatatg
301 atgcaattgc tcgacaagga cagtcaaaag acaaggtcat ttatagcaaa tacactgacc
361 tggttccaaa ggaggttatg aatgcagatg atccagacct gcaaaggccc gatgaagaag
421 ctattaaaga gataacagaa aagacaagag tagccttaga aaaatctgta tcacagaagg
481 tcgccgcagc catgccagtt cgagcagctg acaaattggc tcctgctcag tatatccgat
541 acacaccatc tcagcaagga gtggcattca actctggagc taaacagagg gttattcgga
601 tggtagaaat gcagaaagat ccaatggagc ctccaaggtt caagattaat aagaaaattc
661 cccggggacc accttctcct cctgcgcctg tcatgcattc tcctagccga aagatgactg
721 taaaggaaca acaagagtgg aagattcctc cttgtatttc taactggaaa aatgcaaagg
781 gttatacaat tccattagac aaacgtctgg ctgctgatgg aagaggacta cagacagtac
841 acataaatgg aaatttcgcc aaattggcag aagccctcta cattgctgat cggaaggctc
901 gtgaagctgt ggaaatgcgt gcccaagtag agagaaaaat ggctcagaaa aaaaaaaaaa
961 aa
//