LOCUS BC065028 2539 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone MGC:70545
IMAGE:6042215), complete cds.
ACCESSION BC065028
VERSION BC065028.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2539)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2539)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38605732.
FEATURES Location/Qualifiers
source 1..2539
/db_xref="H-InvDB:HIT000261731"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70545 IMAGE:6042215"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2539
/gene="NUP43"
/gene_synonym="bA350J20.1"
/gene_synonym="FLJ13287"
/gene_synonym="p42"
/db_xref="GeneID:348995"
/db_xref="HGNC:HGNC:21182"
/db_xref="MIM:608141"
CDS 4..1146
/gene="NUP43"
/gene_synonym="bA350J20.1"
/gene_synonym="FLJ13287"
/gene_synonym="p42"
/codon_start=1
/product="nucleoporin 43kDa"
/protein_id="AAH65028.1"
/db_xref="GeneID:348995"
/db_xref="HGNC:HGNC:21182"
/db_xref="MIM:608141"
/translation="MEEIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYI
SLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLH
HPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCNNPEIVTVGEDGRINLFRADH
KEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRV
PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEH
LFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVISSWLSTD
PAKDRIEITSLLPSRSLSVNTLDVLGPCLVCGTDAEAIYVTRHLFS"
BASE COUNT 734 a 492 c 515 g 798 t
ORIGIN
1 ggcatggagg aaatttatgc gaagtttgtg tcccagaaaa tcagcaaaac ccgctggcga
61 ccgctgcctc cgggaagttt acagaccgcg gagacgttcg ctacaggatc ttgggacaat
121 gaggaaaatt atatttcact gtggtctatt ggagattttg gaaacttgga ctctgatgga
181 gggtttgaag gagaccatca gttattgtgt gatatcagac accatggtga tgtaatggat
241 ttacagtttt ttgaccagga aagaattgtc gctgcttcat caacaggatg tgtaacagtt
301 ttccttcacc atccaaataa ccagactctg tcagtcaacc agcagtggac tacagctcac
361 taccacacag gccctggcag tccttcctat agcagtgcac catgtacagg tgttgtgtgc
421 aacaacccag aaatcgttac agttggagag gatggtcgaa taaatctctt cagagctgat
481 cacaaggaag ctgtaagaac catagacaat gcagatagta gtacactcca tgctgtaacc
541 tttcttcgaa ctcctgagat tcttactgta aattcaattg gacagttgaa aatatgggat
601 ttcagacaac aaggaaatga gccttctcag atattgtcac tgactggtga ccgagtgcca
661 ctccactgtg ttgatagaca tcccaaccaa cagcatgttg tagctactgg tggccaagat
721 ggaatgttga gtatttggga tgttagacaa ggtactatgc ctgtatctct gctgaaggct
781 catgaagctg aaatgtggga agttcacttt cacccatcca acccagaaca tctttttacc
841 tgctctgaag atggatccct ctggcactgg gatgcttcca cagatgtacc tgaaaagtcg
901 tcactctttc accaaggagg aagaagcagt acttttttgt ctcatagcat tagtaaccaa
961 gctaatgttc accagtctgt cattagctcc tggctcagca ctgatcctgc aaaagaccga
1021 attgaaatca caagcttact tcccagtagg tctctgtctg tgaacacttt ggatgtttta
1081 ggtccttgtc ttgtttgtgg aaccgatgca gaagcaattt atgttactag acatcttttt
1141 tcgtagaagt actataatta taagatttca gatagaacat gcaattagcc ttttgaaatc
1201 caacttctgt gcaaaatttt agtatcagaa aatacgagat ttgcagggga aacatcagta
1261 aactaccatt aatgtcaatg cccagttttg acttttgtta gcctgacact cccaaacagt
1321 tgtagaatcc gatagatgac tgatggcaaa acattgtgaa catgtggaag aaaatcagtg
1381 ggattctggt gctgatgaat aggttgcctt cagagtatta ttgacagaca gcttgtggaa
1441 ctaattcttt atttttgatg ttgtgggaat taacacatca atggtggtta tgggaactac
1501 caatgggttc ctacaatttt tatcagtagt atgtggcata tacaccttcc tagtggcagt
1561 tgccaatgtt aatgattatt ctttttattg caagtatttc ctatgatcct tccacacttt
1621 atttccttaa taataataaa ctttttcaga aagaattgag tagagcaaaa atgacaaaga
1681 tgtgtagctg tgttcaattt tttttttttt ttttttgagg cagagtcttg ctctgctgga
1741 gtgcggtggt gcaatctcgg ctcactgcaa cctccacctc ccaggttcaa gcaattctcc
1801 tgcctcagtc tcctgagtag ctggaactac aggtgtgcgc caccacgccc agctaatttt
1861 tgtaatttta gtagagacag agtttcacca tgttggccag gatggtctcg atctcttgac
1921 ctcatgatcc acccgcctcg acctcccaaa gtgctgtgat tacaggtgtg agccactgca
1981 cccggcctga aattttttta aggtgaaaat gttttgacaa gttccttttt cagaataggt
2041 ttttgagcag aactctttca gcttgttaga cccaactttg cttttgttta gcttcacagc
2101 atagctgaaa gttgccaaac tggacattgt gcaataaagt agaattctat attgataagc
2161 aaactatttc caaactaaaa atgtgataga taaaagtgtg attaatcaaa tgatatgatc
2221 agagtaaaga attttgccat tttgatcctt ttactttgtt ttagccacct atagtgttac
2281 caaccatctt tatccttgtc tgcagggata ataatgaact aatgtagtgt tttaagataa
2341 tttaatgata ctatctttcc aaactttgtt agattttaaa tgtattattg acctgagacc
2401 ttaatgacaa atcactgcta ttagacaatt gaagtgttca tttactttgt aattccaata
2461 atcatagtta tggaattatg gtaaggtttt gcttttctgt cctaataaat atgtatattt
2521 tttgaaaaaa aaaaaaaaa
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