LOCUS BC064839 3660 bp mRNA linear HTC 13-APR-2006
DEFINITION Homo sapiens collagen, type XVI, alpha 1, mRNA (cDNA clone
IMAGE:6178905), with apparent retained intron.
ACCESSION BC064839
VERSION BC064839.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3660)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3660)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: b Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641351
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3660
/db_xref="H-InvDB:HIT000261596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6178905"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 764 a 1075 c 1222 g 599 t
ORIGIN
1 cctgactctt aaagggcccg caggagcccc cttccagggc agctctgggc acgtagggtc
61 ccgcctagct cgaggatcgc tcacctggcg gtgaggcagg aggggcgggc ctgggagctc
121 ggccagaccc ggggcggggc tgtgcacccc gcagtctagc cgcctctggt gccgctggag
181 ccccctctag gccctcctcc tcctcctccc tggcgggccg gtccagctgt gttccattag
241 tgtccctggc aggcccccag ccccctggaa ccgcctctct tcccccaccc ggagtggccg
301 gcagtccccg gcaggcgtgc gccgggcagc agacagccgg gagagctcga gcgccaggaa
361 gctggggacc cgtgaccgtc acggagagat agagaacccc tagcggacct gaggaacctg
421 ggctctgctt cctccgcctg ctgcctggac tgctcagtga ggtgggggga tccccggcca
481 ccggtgctgt ggctgtagct gacctctttg gaccgggatg tgggtatcct gggctcctgg
541 cctgtggctg ctcggtcttt gggctacctt cggccatggg gcaaatacag gtgcacaatg
601 cccaccttca cagcaggaag gactcaaatt ggaacacagt agtagcctgc cagccaacgt
661 gactggcttc aacctcatcc accgactcag cctcatgaag acgtctgcca tcaagaagat
721 ccgcaacccc aaggggcctc tcatcctgcg cctgggggcg gcccccgtga cccagcccac
781 gcgaagagta ttccctcggg gtctcccgga ggagtttgcc ctggtgctga cactactgct
841 gaagaaacac acccaccaga agacgtggta tctgtttcaa gtgaccgatg caaatgggta
901 tccacagata tccctggaag tcaacagcca agagcggagc ctggagctca gggcccaggg
961 ccaggatggc gactttgtgt cctgcatctt cccagtgccc cagctcttcg acttgcgttg
1021 gcacaagctg atgctgagtg tggctggacg tgtggcctct gtgcacgtgg actgcagctc
1081 agcctcctcc cagcctctgg ggccccgacg acccatgagg cctgtgggcc atgtatttct
1141 aggcttggat gctgagcagg gcaagcctgt ctcgtttgac cttcagcagg tgcacatcta
1201 ctgtgacccg gagctcgtgc tggaggaggg ctgctgtgag attttaccag cagggtgccc
1261 cccagagacc tccaaggccc gccgggacac ccagagcaat gagctcattg agatcaatcc
1321 acagtctgaa ggcaaggtct acacccgctg cttctgcctg gaggagcctc aaaacagcga
1381 ggtggatgcc cagctgacgg gaagaatcag ccagaaggca gaaaggggag caaaggtcca
1441 tcaggagaca gcagccgatg agtgtccgcc ctgtgtccat ggtgcccggg acagcaatgt
1501 cacacttgct ccctctggcc ccaagggagg gaaaggtgag cggggcctgc ctggtccacc
1561 aggctccaag ggagagaagg gagcacgggg caatgactgt gttcgaatct ccccggatgc
1621 cccacttcag tgtgcagaag gcccgaaggg agagaagggg gagtcaggag ctctgggacc
1681 ctcaggactc ccaggctcaa caggcgagaa gggccagaaa ggcgagaagg gcgacggagg
1741 catcaagggc gtgccgggaa agccaggccg ggacggccgg ccaggagaga tctgtgtcat
1801 tgggcccaaa gggcagaagg gagaccctgg ctttgttggg cctgaggggc tggcaggaga
1861 gcctgggccc cccggcctcc ctggaccccc tgggatagga ctgcctggga ccccggggga
1921 tccaggtggc ccaccaggcc ccaagggaga caagggcagc tcggggatcc caggaaagga
1981 aggccctggt gggaaacctg ggaagccagg tgtgaaggga gagaagggtg acccctgtga
2041 agtgtgccca acactgcctg aagggttcca gaactttgtt ggacttcctg gaaagccagg
2101 gcccaaaggg gagcctggtg atcctgtacc agccagggga gaccctggca tccaaggcat
2161 caaaggagag aagggggagc cctgcttgtc ctgcagctcg gttgtagggg cccagcatct
2221 tgtgtcctcc acaggggcca gtggagatgt gggttcccct ggctttggtc tgcctggcct
2281 tccgggtaga gctggggttc cagggctgaa aggagagaag ggtaacttcg gggaggcagg
2341 gccagctggc agtccagggc caccaggacc agtggggcca gcaggcatca aaggggcgaa
2401 gggggagccc tgtgagccgt gcccagccct gtccaacctt caggatgggg atgtccgtgt
2461 ggtggccttg cctggcccat ccggagagaa gggggaacct gggcctccag gctttggctt
2521 gccaggaaaa cagggcaagg ctggagagcg tggactgaag gggcagaagg gtgatgctgg
2581 gaatcctgga gaccctggaa cgccgggcac cacagggcgg ccaggactgt caggagagcc
2641 tggagttcag ggccccgcgg ggccaaaagg agaaaagggt gatggctgca ctgcctgccc
2701 cagcctgcag gggacagtga cagacatggc aggacggcct gggcagcccg gccccaaagg
2761 agagcagggc cccgaaggcg tgggccgacc tggtaaaccc ggccaacccg gtctaccagg
2821 agttcaaggg cccccaggac tgaagggcgt gcagggagag ccagggcctc caggaagggg
2881 agtccaggga ccccaggggg agcctggagc cccgggtttg cctggcattc agggacttcc
2941 gggacctcgg ggaccacctg gccccactgg agagaagggt gcccagggat ctccaggggt
3001 gaaaggagcc accggacccg tgggacctcc tggggccagt gtctctgggc ctccgggccg
3061 tgatgggcag caaggacaga cgggactcag aggaacacca ggtgaaaaag gaccacgagg
3121 agagaagggt gagccagggg agtgctcctg cccctctcaa ggagacctca tcttctctgg
3181 catgccgggt ccaccaggta ttcccggacc accaggcccc cctggagtac ctgggctgca
3241 ggtaaagggg gagaagagaa tgaggagctt gggtggcaga gctcatgggt caggatggct
3301 gctcccggct ggaccccaag gatgctgctc ccccacccca aaaacacaga catgccattt
3361 ctcactcctc tgtttacctg cctcccaggg tggcaaggag ggcccactga gcctctaggc
3421 caggctctgc actcccagca ctgtttcaag caatgcactg ttgcatcagc tgtcaggcac
3481 ccacaatctg ggtcagataa aaatccctta ccctggtaca gagcccggcc cactgttttg
3541 gagtagcatt caacactcat tcatgcaaca tgtgtttttg cacatttgct attttctggc
3601 actgctttaa ctgctgtgaa tacagtagtg gctaaaaata aaaaaaaaaa aaaaaaaaaa
//