LOCUS BC064662 4893 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 2, mRNA (cDNA clone
MGC:60039 IMAGE:6528158), complete cds.
ACCESSION BC064662
VERSION BC064662.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4893)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4893)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544228.
FEATURES Location/Qualifiers
source 1..4893
/db_xref="H-InvDB:HIT000261566"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60039 IMAGE:6528158"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4893
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
CDS 53..1558
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/codon_start=1
/product="TNF receptor-associated factor 2"
/protein_id="AAH64662.1"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
/translation="MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRP
FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES
LPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERS
LSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRF
HAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLE
KKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLKDLA
MADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL
RIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL"
BASE COUNT 980 a 1350 c 1429 g 1134 t
ORIGIN
1 cggacgcgtg ggtgcgaccg ttggggcttt gttcgcgggg gtcacagctc tcatggctgc
61 agctagcgtg accccccctg gctccctgga gttgctacag cccggcttct ccaagaccct
121 cctggggacc aagctggaag ccaagtacct gtgctccgcc tgcagaaacg tcctccgcag
181 gcccttccag gcgcagtgtg gccaccggta ctgctccttc tgcctggcca gcatcctcag
241 ctctgggcct cagaactgtg ctgcctgtgt tcacgagggc atatatgaag aaggcatttc
301 tattttagaa agcagttcgg ccttcccaga taatgctgcc cgcagggagg tggagagcct
361 gccggccgtc tgtcccagtg atggatgcac ctggaagggg accctgaaag aatacgagag
421 ctgccacgaa ggccgctgcc cgctcatgct gaccgaatgt cccgcgtgca aaggcctggt
481 ccgccttggt gaaaaggagc gccacctgga gcacgagtgc ccggagagaa gcctgagctg
541 ccggcattgc cgggcaccct gctgcggagc agacgtgaag gcgcaccacg aggtctgccc
601 caagttcccc ttaacttgtg acggctgcgg caagaagaag atcccccggg agaagtttca
661 ggaccacgtc aagacttgtg gcaagtgtcg agtcccttgc agattccacg ccatcggctg
721 cctcgagacg gtagagggtg agaaacagca ggagcacgag gtgcagtggc tgcgggagca
781 cctggccatg ctactgagct cggtgctgga ggcaaagccc ctcttgggag accagagcca
841 cgcggggtca gagctcctgc agaggtgcga gagcctggag aagaagacgg ccacttttga
901 gaacattgtc tgcgtcctga accgggaggt ggagagggtg gccatgactg ccgaggcctg
961 cagccggcag caccggctgg accaagacaa gattgaagcc ctgagtagca aggtgcagca
1021 gctggagagg agcattggcc tcaaggacct ggcgatggct gacttggagc agaaggtctt
1081 ggagatggag gcatccacct acgatggggt cttcatctgg aagatctcag acttcgccag
1141 gaagcgccag gaagctgtgg ctggccgcat acccgccatc ttctccccag ccttctacac
1201 cagcaggtac ggctacaaga tgtgtctgcg tatctacctg aacggcgacg gcaccgggcg
1261 aggaacacac ctgtccctct tctttgtggt gatgaagggc ccgaatgacg ccctgctgcg
1321 gtggcccttc aaccagaagg tgaccttaat gctgctcgac cagaataacc gggagcacgt
1381 gattgacgcc ttcaggcccg acgtgacttc atcctctttt cagaggccag tcaacgacat
1441 gaacatcgca agcggctgcc ccctcttctg ccccgtctcc aagatggagg caaagaattc
1501 ctacgtgcgg gacgatgcca tcttcatcaa ggccattgtg gacctgacag ggctctaact
1561 gccccctact ggtgtctggg ggttgggggc agccaggcac agccggctca cggaggggcc
1621 accacgctgg gccagggtct cactgtacaa gtgggcaggg gccgcgcttg ggcgcttggg
1681 agggtgtcgg cctgcagcca agttcactgt cacgggggaa ggagccacca gccagtcctc
1741 agatttcaga gactgcggag gggcttggca gacggtctta gccaagggct gtggtggcat
1801 tggccgaggg tcttcgggtg cttcccagca caagctgccc ttgctgtcct gtgcagtgaa
1861 gggagaggcc ctgggtgggg gacactcaga gtgggagcac atcccagcag tgcccatgta
1921 gcaggagcac agtggatggc cttgtgtccc tcgggcatga caggcagaaa cgagggctgc
1981 tccaggagaa gggcctcctg ctggccagag caaggaaggc tgagcagctt ggttctcccc
2041 tctggcccct ggagagaagg gagcattcct agacccctgg gtgcttgtct gcacagagct
2101 ctggtctgtg ccaccttggc caggctggct gtgggagagg gtctggtccc acgccgcctc
2161 tgctcagacc actgtgtggg aggtgcacag cacagcctgc gggtaaagtg tgagagcttg
2221 ccatccagct cacgaagaca gagttattaa accattcaaa tctctgtggt cagtggcatc
2281 catttgattc caggttgcct gcggcttcca gccttggcag tggtgaccct ctgcgggtcc
2341 tcctggcctc tcctctcaca gacccctccc cacggggtgc ctagcccctg cctgcttctc
2401 tagctagcca ggctgtgttc tctgttcctc acctgatgta agctccctct tctcgagcct
2461 tgttccctct tctggaatgt tcttccctgt ccatctcctc tcctgggcct ccccagggac
2521 tcctgtgaga gcagaatgag gatgagccag ccctggtcct gcctttctgt gcacaggctc
2581 caccgagcat cctggctgca cccggggggt cctggccaca ccgagggtcc tggctgcacc
2641 gcccctgtgg tgtgtttttg ggacagtgca ggcaggcgta ggcacggctt cacactcggt
2701 gtcagggcag ccgtgctggg acctactggg catctgtatc ggggtccagg ataaagtgct
2761 gtcccctctc gacgtcttca cgcactgctg tagtttgaga agttgaccac agaaaagtac
2821 agaaaataac tcaggcacgg agctgaccga cgggcattgt ctgtgttccg tgagtgtgta
2881 ctgggcctaa agagcaagca ttgcagagcc ctgctgttcc ctttcccggc ctcacctcag
2941 ctccccaggc cacgtggcgg gaattgaggc gttccggttc tctttgggct ttagaatttt
3001 gcatctgtac gtttctgtat tcacaaataa gaatattgca ttaaaaatgc agaaaccatc
3061 cactgggtca gctgcaggta gctgggcttt tgactcagcc tggctacttt taatgcatct
3121 tgtgctgggc actctacatg gtggattctg actgccgtgt gtgagttccc tagagagcac
3181 cttccagtct cttcccgtgt cttcagggtt tggtgactgg agatagccag acctgctctc
3241 gtgggtctcc tgtcaacctg gaaggagggt tggtggtttc taggcctccc ctttttagca
3301 gttgccagct tgctttgcag aggggctgca tccggtcctt ccaccagcac cagggggagg
3361 gttcccatca ctcccatccc tcccatccct gcccgtgctt cgtgttgttg gaattgagat
3421 gctgcagcgt gctgtgtgtg aagtgaagtg gcatcgctgt cacgtgcgtt tctctgatga
3481 ctcggcggag tcaggcgtct ttaccacgct tacctctccc ttggattctc tcccgtgcga
3541 attgcctgtt gatgtctttt tctcattttt cttctggttg ttggtctggg tcttattctg
3601 ctggttggta ggagttcctg atattcctga ttacggattc tcggttgtgt ctttgaactg
3661 cgtttctgtt gctcctgatg tgcagaagct taagccttac acatgatcag ctgatcttat
3721 cctttatgaa tggtgctatt tccgaccgac tcagaacatc ctgaccttcc ctgaggctgg
3781 aaaccactgt catgttttcg tctaatgatt gtgaagtttt gtctttaaca tactgggctt
3841 ctatatttgg ggatttgttt gtatgtgaca ggttttgctg ggtcactgca gtttgttaaa
3901 acagattgat tgaggtcatc tcttctcact taaaacgaaa tggaactgtg aaatgagagg
3961 aatggaccaa aaaaaaatcc tcccccaggg acaaagatgg ggaagaagcc aacatcccac
4021 aaaggatttg aacccatttt ggaaggtggg aagtgggttg gtgggtggct gctgagcaga
4081 agagggctga gggggaagct ggccacaccg ggaggccctg gcatggagca gagtctaaaa
4141 gtggatcaac tgaaagacgg ggcagagcag ctaccttgga ggtcctttgc cagagcagcc
4201 ggatggtcct cctggccctc acctccctgc agtggagatg gaggtctgga gaacctgggg
4261 aagagctgag gaccgcaccc cccacgcagt gagagcagca tcgggctcca ggctgcagaa
4321 ggggcagagg tctgcactcg gaacaattcc ctaggcactg gctgccacac caagaggctc
4381 ccacgaagca gaccaaggcc cttgagggac aaaatgctct ggagcagccc cgtgggcagg
4441 cctggcccag ccgcctcatg gccttctggg gaagtgacag gctctgtgca aacccacaga
4501 ggtaccatcg tcactaccta attttgggac atttcatcac cctgcagaga aaccttccct
4561 tagcagtcac tgttccctcc cgctcagccc ctgacagcca gccataaacc taccttctgt
4621 ctctatagat ttgcctactc aggacattca tgtgaatgtg gcctttgctt ttactcagca
4681 agatattttc atggttcctg tgtgttgcag catgcattgg agtttcattc cttctaatgg
4741 ctgaataatc tcttgtatgg atgcaccaca ccttatttat ccattcatcc gttgctggac
4801 atttgggtgg tttctacttt ttggctactc tgaaaatgct gctgtgaaca tttgtgaaca
4861 agtttttatg gggacgtgaa aaaaaaaaaa aaa
//