LOCUS BC063872 5303 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 9, mRNA (cDNA clone
MGC:75399 IMAGE:6471552), complete cds.
ACCESSION BC063872
VERSION BC063872.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5303)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5303)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: h Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..5303
/db_xref="H-InvDB:HIT000261248"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75399 IMAGE:6471552"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5303
/gene="TRIM9"
/gene_synonym="KIAA0282"
/gene_synonym="RNF91"
/gene_synonym="SPRING"
/db_xref="GeneID:114088"
/db_xref="HGNC:HGNC:16288"
/db_xref="MIM:606555"
CDS 1123..3255
/gene="TRIM9"
/gene_synonym="KIAA0282"
/gene_synonym="RNF91"
/gene_synonym="SPRING"
/codon_start=1
/product="tripartite motif-containing 9"
/protein_id="AAH63872.1"
/db_xref="GeneID:114088"
/db_xref="HGNC:HGNC:16288"
/db_xref="MIM:606555"
/translation="MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPES
ESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVF
PPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQ
SKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVS
RRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQ
LSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQL
LARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRR
VHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEE
CCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNST
YNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDR
VVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNR
SWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTFFINDEQQGPIAFDNVEGLFFPA
VSLNRNVQVTLHTGLPVPDFYSSRASIA"
BASE COUNT 1361 a 1395 c 1361 g 1186 t
ORIGIN
1 aaactacggg cactcagaaa tagacaaact gttcttgcct caaccgaacc aaaggcccag
61 cgggcctcga aaaagctcag ccaggtgctt tgggaggccg cgaggaggaa gaaggatccg
121 tggaaggaag cacgttcaca ccacggcact gaggcctctg ggccgagcta taatttaaag
181 catgaaacga aggggtcata gattctgact aatgctgacc atttccatcg gttacccagt
241 tgaatctcat gtcgacacta ggaaatcgac tttatacatg ctctttagga aacgagggac
301 gcaggatgaa agaagccaag agtgtcgcca gggcttgcgc cagcgccgtc agactcccgg
361 gatgggggag ctccagggca cggcgtcagc ggattcacgg agaaggagaa aagccccact
421 gccgtgcaga agcctaggcc cgggtgagac gcctgcgaag gctgccagca gcggaagaga
481 aggggcgtcc tccgtgctgc gcagcactcg cccgcggtag gtgggcgcgg agctcagagc
541 tgggagccaa acgcaaacgc tggcgagaag ccccagcccc ctccgccagc ccactcgctg
601 cggggagggg tttctcacgc ccccagctcc tgggagactg caccggaggt cggaagtaag
661 ccgggcgagg atgaatcatc ccgcctaact cctccttccc ggtcccctag cctccgcacg
721 ccggccccct tcagagatct tgcagccgcg agcgaagact gccctatcct cagactctac
781 cgaaccccct gtggcctgcg gagacgagga gacggacggg tctggtggcc aatgagagct
841 tcgatctctt gccccccgcc caatgggccg ctgctcatgg gccggggcgg gactaggagg
901 gcaggtaggg gcggtccggg ctggcgcgcg gcgcggcggc tacgcggctg cggctcacag
961 agctagcgcc tctctgggtg tccgtgccag tgctgcgcgg gaaggcacca ccaccacagc
1021 cgccgccgct ggccagggtg ctggacaaga cgggcccgtc ggccacctcg ccagctcagg
1081 cacccgctgc agccgtcgct gtctcctccc agaccggtcc ccatggagga gatggaagag
1141 gagttgaaat gccccgtgtg cggctccttc tatcgggagc ccatcatcct gccctgctct
1201 cacaatttgt gtcaggcgtg cgcccgcaac atcctggtgc agaccccaga gtctgaatcc
1261 ccccagagcc atcgggccgc gggctccggg gtctccgact atgactatct ggacctggac
1321 aagatgagcc tatacagcga ggcggacagc ggctatggct cctacggggg gttcgccagc
1381 gcccccacta ccccgtgcca gaagtccccc aacggcgtcc gcgtgtttcc cccggctatg
1441 ccgccaccgg ccacccactt gtcaccggcc ctggccccgg tgccccgcaa ctcctgtatc
1501 acctgccccc agtgtcaccg cagcctcatc ctggatgacc gggggctccg cggcttcccc
1561 aagaatcgcg tactggaagg ggtaattgac cgctaccagc agagcaaagc cgcggccctc
1621 aagtgccagc tctgcgagaa ggcgcccaag gaagccaccg tcatgtgcga acagtgcgat
1681 gtcttctact gcgatccgtg ccgcctgcgc tgccacccgc cccgggggcc cctagccaag
1741 caccgcctgg tgcccccggc ccagggtcgt gtgagccgga ggctgagccc acgcaaggtc
1801 tccacctgca cagaccacga gctggagaac cacagcatgt actgcgtgca atgcaagatg
1861 cccgtgtgct accagtgctt ggaggagggc aaacactcca gccacgaagt caaggctctg
1921 ggggccatgt ggaaactaca taagagccag ctctcccagg cgctgaacgg actgtcagac
1981 agggccaaag aagccaagga gtttctggta cagctgcgca acatggtcca gcagatccag
2041 gagaacagtg tggagtttga agcctgtctg gtggcccaat gtgatgccct catcgatgcc
2101 ctcaacagaa gaaaagccca gctgctggcc cgcgtcaaca aggagcatga gcacaagctg
2161 aaggtggttc gagatcagat ctctcactgc acagtgaaat tgcgccagac cacaggtctc
2221 atggagtact gcttggaggt gattaaggaa aatgatccta gtggtttttt gcagatttct
2281 gacgccctca taagaagagt gcacctgact gaggatcagt ggggtaaagg cacactcact
2341 ccaaggatga ccacggactt tgacttgagt ctggacaaca gccctctgct gcaatccatc
2401 caccagctgg atttcgtgca agtgaaagct tcctctccag tcccagcaac ccctatccta
2461 cagctggagg aatgttgtac ccacaacaac agcgctacgt tgtcctggaa acagccacct
2521 ctgtccacgg tgcccgccga tggatacatt ctggagctgg atgatggcaa cggtggtcaa
2581 ttccgggagg tgtatgtggg gaaggagaca atgtgcactg tggatggtct tcacttcaac
2641 agcacataca acgctcgggt caaggccttc aacaaaacag gagtcagccc gtacagcaag
2701 accctggtcc tccaaacgtc tgaggtggcc tggtttgctt tcgaccctgg ctcggcgcac
2761 tcggacatca tcctctccaa tgacaacctg acagtgacct gtagtagcta tgatgaccgg
2821 gtggtgctag ggaagactgg cttctccaag ggcatccact actgggagct cacggtagat
2881 cgctatgaca accaccctga tcctgccttt ggtgtggctc gcatggacgt gatgaaggat
2941 gtgatgttag gaaaagacga caaagcttgg gcaatgtatg tggacaataa ccggagctgg
3001 ttcatgcaca acaactcgca caccaacaga actgagggag ggatcacaaa aggggccaca
3061 attggggtcc tcctcgactt caatagaaaa aacttgacat tttttatcaa cgatgaacaa
3121 caaggtccca tagcatttga taacgtggag ggcctcttct tccctgcggt cagcctgaac
3181 aggaacgtgc aggtcacgct gcacaccggg ctcccagtcc ccgacttcta ctccagcaga
3241 gcatcaatag cctaaggatg tgccgtggag gcgccagctg cctgttctta cctccgcctg
3301 cgagagccac agcaaggagc tcagccagcc gtggtggggt gcagagttgg caggagtggg
3361 agaaggagga gagaaaagct ggtcctctgc agtctttaca cccacagctc tgcccttttc
3421 cctttcaacc tctcctccgc tgtcatgcct gcttccgctt ccatgtccaa caattctaac
3481 caacaaagga cctagacagc ccaccaagtc acttggttcc cactcccaga ttttgctttt
3541 atttaactta attttttatg taggtgagtt atattttctt tcttttctga tcaggttatt
3601 ggtgacttac tggactggca ccgccaggag aaaattctcc tgctaacttt ttttcttaag
3661 ctttctgtca aacaatgagg ttgtaggggg aggtagggaa gaatgagctg aatttgtagc
3721 atacagctta cctgctagaa tgttcttacc ctcttacctc tcctgtagcg ttagctctgc
3781 agagctaagc tttgggagaa tgaatctatc actgagaagt tttactactc attgaagcac
3841 aaaaatatcc gctacacagg ttcacatcag ggtaggatcg ttaggatggc tctataatta
3901 ggacaggcca gaaccctggc cactgtataa aattggaaag tctctaagac acaggcaaac
3961 caggggactt aatgatttgg ttcgtttatt taataaaagc ttttaattga gaacctacta
4021 ttgaccaggc actgttcaag acactagaac attatgttct agacactgtg gggacacagt
4081 ggtgaacaga caggcatggt ctctgccctt cggagcttat attccagtag gagaaaaagc
4141 aaaaataaaa taattataaa tggtcatatg tactagaaag gaaatgggca agggtcaaag
4201 agactcatgg gcaagatctt tcaggcttcc tagaatgatg ctaaaaatcc acacattctg
4261 gccatagcac cagaaatgta ccaactcaat gccttttcag ctgcactatt taattatggt
4321 acctgctgcc actcatcaca gagcccttct tggtagaaat gatgtcagca ttcttatttg
4381 ctgatgctgc tatgatacca cgccttaaaa attgacagtt gaaaaaaaaa agagtgacca
4441 gagggcaaag gacccattct cagtaatggg agatcttgag ttgcagtcca cagcattcac
4501 attctcagga taaacatgct tgtctccata tatactatct gtgcctgtta tgaatgaaaa
4561 atccatccac tctgctgcca ttcacagcct aattttctgg agtagtccaa acaatgtttg
4621 gaaaaacatg ggactgtatg tcattactat gactgatagc agaataataa tgcatcttac
4681 ttctatatag agatagactt acataggtta cccttgaaat tcattagttt gtcataaagt
4741 tttaggaaag gtaggacccg gaaagaagtt ctaattagtt gtctaaatat ttttcagtga
4801 gccaagaaat tcaccatgaa aaaacaagaa taacaaatag aagggaagag ataggatggg
4861 aaagctaaca aattaaagtt ttggcaaaaa ggaatatatg taaatagcta attatttact
4921 tttgtgctta ctttatttag attatttcta tcagttacaa tctttttcta gttaagtgta
4981 cctaatttat ggaatgggtg ctatcctgtt tatgtgtgtc ttggtttttc ttggctacag
5041 aaaaactgtt gcagggcaac actagtttga tatttgattt actctccaat gagactcaat
5101 ggctgggccg tggtagactc atagttcctc ttgttcttta ttaaattcat cctgctaatt
5161 agatttctag tgacttgtaa catgtagttt acactgaatt gcaattacag atgcatacaa
5221 ctactatact agaaaaaatt gtcatttctg atgtgccaat aaatgatttt tatgagagaa
5281 taaaaaaaaa aaaaaaaaaa aaa
//