LOCUS BC063839 3323 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sphingosine-1-phosphate phosphatase 1, mRNA (cDNA clone MGC:74883 IMAGE:6184825), complete cds. ACCESSION BC063839 VERSION BC063839.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3323) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3323) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 141 Row: d Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254975. FEATURES Location/Qualifiers source 1..3323 /db_xref="H-InvDB:HIT000261215" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:74883 IMAGE:6184825" /tissue_type="Peripheral Nervous System, dorsal root ganglion" /clone_lib="Lupski_dorsal_root_ganglion" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3323 /gene="SGPP1" /gene_synonym="SPPase1" /db_xref="GeneID:81537" /db_xref="HGNC:HGNC:17720" CDS 95..1420 /gene="SGPP1" /gene_synonym="SPPase1" /codon_start=1 /product="sphingosine-1-phosphate phosphatase 1" /protein_id="AAH63839.1" /db_xref="GeneID:81537" /db_xref="HGNC:HGNC:17720" /translation="MSLRQRLAQLVGRLQDPQKVARFQRLCGVEAPPRRSADRREDEK AEAPLAGDPRLRGRQPGAPGGPQPPGSDRNQCPAKPDGGGAPNGVRNGLAAELGPASP RRAGALRRNSLTGEEGQLARVSNWPLYCLFCFGTELGNELFYILFFPFWIWNLDPLVG RRLVVIWVLVMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPIS MVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDIIAGFLYTILILAVFYP FVDLIDNFNQTHKYAPFIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSH VTYNMGLVLDPSLDTLPLAGPPITVTLFGKAILRILIGMVFVLIIRDVMKKITIPLAC KIFNIPCDDIRKARQHMEVELPYRYITYGMVGFSITFFVPYIFFFIGIS" BASE COUNT 905 a 638 c 699 g 1081 t ORIGIN 1 gcgctgtgcc ggttccgctg ccgctggcca ggagcgcggg gacagttcgg ggctgcgccg 61 gaggccggcc cgccttcccg ggggttccgt tatcatgtcg ctgaggcagc gcctggccca 121 gctggttggc cgtctgcagg acccgcagaa agtggcccgt ttccagcggc tgtgcggggt 181 ggaagcgccg ccgcgccgct cagcagaccg gagggaggat gagaaagcgg aggcgcctct 241 cgccggagac cctcgactgc gagggcggca gccaggggcg cctggaggcc cccagcctcc 301 cgggagcgac cgcaatcagt gcccggccaa gccggacggc ggcggcgccc ccaacggcgt 361 gcggaacggg ctggcggccg agctgggccc ggcctcgccg cggcgcgcgg gcgctctgcg 421 ccgcaactcg ctgacgggcg aggagggcca gctggcccgc gtgagcaact ggccgctcta 481 ctgcctgttc tgcttcggca cggagctggg caacgaactc ttctacatcc tgttcttccc 541 cttctggatc tggaacctgg accctctggt gggccggagg ctcgtggtca tctgggtgct 601 ggtcatgtac ctgggccagt gcaccaagga catcatccgc tggccgaggc ccgcctcgcc 661 gcccgtggtc aagttggagg tcttctacaa ctctgagtac agcatgccct ccacccatgc 721 catgtccggc accgccatcc ccatttctat ggtcctcctc acctatggcc gctggcagta 781 ccctcttata tatggactga ttcttattcc ctgctggtgt tctctagttt gcctaagtag 841 aatttacatg ggaatgcact ctattctgga tattattgct ggattcctat ataccatttt 901 aatcttagct gtcttctatc catttgtgga cctgattgac aacttcaacc aaactcacaa 961 atatgctcca ttcatcatca tcgggcttca tttagctttg gggatctttt ctttcactct 1021 tgacacctgg agcacatccc gaggagacac agccgagata ctaggaagtg gtgctggaat 1081 tgcatgtgga tctcatgtta cttataacat gggtctagta ttagatcctt ctctagatac 1141 attaccttta gctgggcccc ccattactgt gactctgttt ggaaaagcca tattgcggat 1201 cctcataggg atggtatttg tactaataat cagagatgta atgaaaaaga tcaccattcc 1261 tttagcctgc aaaatcttca atataccgtg tgatgatatt cgaaaagcaa gacagcacat 1321 ggaagttgaa cttccttatc ggtatattac ctatggaatg gttggtttct ccatcacatt 1381 ttttgttcct tacatatttt tctttattgg tatctcttga tggagaagta ttgtttatga 1441 taagaaagga gggtatcagt tactgatacc caaaaatata ttccaggtaa agccaggtca 1501 gaattaggct tttgcaggaa tttaacttaa ataattattt aagtaaattc ataagagtca 1561 gtgcatttta tcattgcaca tccagatact gttttaggtg agctgagcta tttcgttact 1621 gagaaaatga taagtatcca tttagaatgt tcatgtaatg tttggagagt tttgtattat 1681 ggattcaact tatatataat atatataagg tacataatat gcaattatgt atctgatata 1741 tattatatat aaaataatat acctaagtgt ttttttaaac tatgggagtg tattataaaa 1801 tcaataataa tatgcaaaca gttgtgcctg tgtatttgaa ctacatacag gtatgttgtt 1861 attaacagat atatttaaca tttatttact atgggagcca tttcctaatt gaattgcgta 1921 attactagac cagaatgcat atgctactat acattgattt actgcctgtt tttacactgc 1981 cattaccttt catgttatcc atgatgttga acatgggagg catttttaat ggaccaaatt 2041 tttagaaaaa ttagtttttg gatttttttt taagttctgt atactgtttt gaatgaactt 2101 tatttgcagc tattctggat gtcagtttaa taattcaggt actgaatttt attgcttgct 2161 aattgtgcct ttccgttgct aaattaagaa atgctatgtg tactgtgatg taaaaataag 2221 acattaactt tatcttaagt tacatataat caagcaaata ttttaaaaaa tgtatgtcag 2281 ggtgacaggc ataaaagtaa attaccctta actctttagc ctttatttag aaagaaatgt 2341 ggaatgggct aaactttctc accaatttat tagaaagcta aatggataaa tacttccctt 2401 tttgtagata tttttctgtg cattgtaagt tataggagca ggacatattt tttgtacatt 2461 gtcttgattg tttatactgc aggtaggtat ttccagtgaa tggaaacgtt gaaatttata 2521 gatgggacaa tgcacatact tcatatgtaa acaaagcatt tttctaaata atttggaaag 2581 gattggattt agcaccgtta acttttaata cccatttatt ggctatttaa ggtaaattat 2641 aaaacctaaa attagtatca gtattttaga tcctattatt ttttcaactt tctattattt 2701 tcacagtgga aaatttgcgt atagtattaa actattcttt tttctgtcta cctttatatt 2761 ttgaagtgtg gttgtactta cgttaatagt aagtgtattt gtagaaagtt tttcataaag 2821 aagagattaa ctttccatat aaataaatac caggtatgaa attactgatt ttagtgcaat 2881 atctgtatga ttatccagaa ctatcacttc agatgtttct attttgggca ccataactat 2941 ttgagctcat atttttataa ttctgattga gaatttaggg gcatggtaat ttttaccaaa 3001 actgaagctg gtaattttaa gtaaagcaac taaatttacc ctttacttat tagttaaaag 3061 gaaaccaagg catgtaggaa aatattggta cgttggaaaa tgtgaaaaga gctttacttt 3121 caaaatgtat gtttaatgaa ttgaatttta gggaccgttt cccataattt gggcctatgc 3181 tatcctgttg atttttatgt ctagcttaaa aggtatttga aaatgttcca tttgtgtttt 3241 attattttct gtcctatgac agttctatgc taaatgtatt ttaaaataaa agccaaattg 3301 aagattaaaa aaaaaaaaaa aaa //