LOCUS BC063645 2881 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 9, X-linked, mRNA (cDNA
clone IMAGE:4538919), partial cds.
ACCESSION BC063645
VERSION BC063645.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2881)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2881)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: l Column: 21.
FEATURES Location/Qualifiers
source 1..2881
/db_xref="H-InvDB:HIT000261099"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4538919"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2881
/gene="USP9X"
/gene_synonym="DFFRX"
/gene_synonym="FAF"
/db_xref="GeneID:8239"
/db_xref="HGNC:HGNC:12632"
/db_xref="MIM:300072"
CDS <1..2759
/gene="USP9X"
/gene_synonym="DFFRX"
/gene_synonym="FAF"
/codon_start=3
/product="USP9X protein"
/protein_id="AAH63645.1"
/db_xref="GeneID:8239"
/db_xref="HGNC:HGNC:12632"
/db_xref="MIM:300072"
/translation="KEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNL
REQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFT
TLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQ
LKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQSEQSE
SETAGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGERNRWYKFDDGDVTECKMDD
DEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDQDDELIRYIS
ELAITTRPHQIIMPSAIERSVRKQNVQFMHNRMQYSMEYFQFMKKLLTCNGVYLNPPP
GQDHLLPEAEEITMISIQLAARFLFTTGFHTKKVVRGSASDWYDALCILLRHSKNVRF
WFAHNVLFNVSNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSS
QAYDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLSVP
ATFMLVSLDEGPGPPIKYQYAELGKLYSVVSQLIRCCNVSSRMQSSINGNPPLPNPFG
DPNLSQPIMPIQQNVADNLFVRTSYVKKIIEDCSNSEETVKLLRFCCWENPQFSSTVL
SELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRS
KNHYQKRAYQCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGN
PQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEEEPDDQDAPDEHESPP
PEDAPLYPHSPGSQYQQNNHVHGQPYTGPAAHHMNNPQRTGQRAQENYEGSEEVSPPQ
TKDQ"
BASE COUNT 890 a 572 c 621 g 798 t
ORIGIN
1 gaaaagagta caacattggt gtcctaagac accttcaggt catctttggt catttagctg
61 cttctcgact gcaatactat gtgcccagag gattttggaa acagttcagg ctttggggtg
121 agcctgttaa tctgcgtgaa caacacgatg ctttagaatt ttttaattca ttggtggata
181 gtttagatga agctttaaaa gctttaggac atccagctat gctaagtaaa gtcttaggag
241 gttcctttgc tgatcagaag atctgccaag gctgcccaca taggtacgaa tgtgaagaat
301 cttttacgac cctaaacgta gacattagaa atcaccaaaa tcttcttgat tctttggaac
361 agtatgtcaa aggagattta ctagaaggtg caaatgcata tcattgtgaa aaatgcaata
421 aaaaggttga taccgtaaag cgcttgctga ttaaaaaatt acctcctgtt cttgctatac
481 aactaaagcg atttgactat gactgggaaa gagaatgtgc aatcaagttc aatgattatt
541 ttgaatttcc tcgagagctg gacatggaac cttacacagt tgcaggtgtc gcaaagctgg
601 aaggggataa tgtaaaccca gagagtcagt tgatacaaca gagtgagcag tctgaaagtg
661 agacagcagg aagcacaaaa tacagacttg tgggtgtgct cgtacacagt ggtcaagcga
721 gtggggggca ttattattct tacatcatcc aaaggaatgg tggagatggt gagagaaatc
781 gctggtataa atttgatgat ggtgatgtaa cagaatgtaa aatggatgat gacgaagaaa
841 tgaaaaacca gtgttttggt ggagagtaca tgggagaagt gtttgatcac atgatgaagc
901 gtatgtcata caggcgccag aaaaggtggt ggaatgctta tatacttttt tatgaacgaa
961 tggacacaat agaccaagat gatgagttga taagatatat atcagagctt gctatcacca
1021 ccagacctca tcagattatt atgccatcag ccattgagag aagtgtacgg aaacagaacg
1081 tacaattcat gcataaccga atgcagtaca gtatggagta ttttcagttt atgaaaaaac
1141 tgcttacatg taatggcgtt tacttaaacc ctcctcccgg gcaagatcac ctgttgcctg
1201 aagcagaaga aatcactatg atcagtattc aacttgctgc taggttcctc tttactacag
1261 gatttcacac aaagaaagta gtccgtggct ctgccagtga ttggtatgat gcattgtgta
1321 ttctccttcg tcacagcaag aatgtacgtt tttggtttgc tcataacgtc ctttttaatg
1381 tttcaaatcg cttctccgaa taccttctgg agtgccctag tgcagaagtg aggggtgcgt
1441 ttgcaaaact tatagtcttt attgcacatt tttccttgca agatgggcca tgtccttcac
1501 cttttgcctc tcctggacct tctagtcagg cttatgacaa cttaagcttg agtgatcact
1561 tactaagagc agtactaaat ctcttgagaa gggaagtttc agagcatggg cgtcatttac
1621 agcagtattt caacctgttt gtaatgtatg ccaatttagg tgtggcagag aagacacagc
1681 ttctgaaatt gagtgtacct gctactttta tgcttgtgtc tttagatgaa ggtccaggtc
1741 ctccaatcaa ataccagtat gctgaattag gcaaattata ctcagtagtg tcacagctga
1801 tccgctgttg caatgtctct tcaagaatgc agtcttcaat caatggtaat cctcctcttc
1861 ccaatccttt tggtgatcct aatttatcac aacctataat gccaattcag cagaatgtgg
1921 cagacaattt atttgtgaga acaagttatg tgaagaaaat cattgaagac tgcagtaatt
1981 cagaggaaac cgtcaaattg cttcgttttt gctgctggga gaatcctcag ttctcatcta
2041 ctgtcctcag tgaacttctc tggcaggttg catattccta tacctatgaa ctgcggccct
2101 atttggatct gcttttgcaa atcttactga ttgaggactc ctggcaaact cacagaattc
2161 ataatgcact gaaaggaatt ccagatgacc gagatgggct gtttgacaca atccagcgct
2221 ctaagaatca ctatcaaaaa agagcatacc agtgtataaa atgtatggta gctctattta
2281 gtaactgtcc tgttgcttac caaatcctgc agggcaatgg agatcttaaa agaaagtgga
2341 cctgggcagt ggaatggctt ggagatgaac ttgaaagaag accatatact ggcaatcctc
2401 agtacactta caacaattgg tctcccccag tgcaaagcaa tgaaacgtcc aatggttatt
2461 tcttggagag atcacatagt gctaggatga cacttgcaaa agcttgtgaa ctctgtccag
2521 aggaggagcc agatgaccaa gatgctccag atgaacatga gtcgcctcca cctgaagatg
2581 ccccattgta cccccattca cctggatctc agtatcaaca gaataaccat gtgcatggac
2641 agccatatac aggcccagca gcacatcaca tgaacaaccc tcagagaact ggccaacgag
2701 cacaagaaaa ttatgaaggc agtgaagaag tatccccacc tcaaaccaag gatcaatgaa
2761 atgcacataa ttaactggtt ccatcaagac tgtgcaccca ggccttacag tccaaccttt
2821 ttctgtgtct ggctaatatt taaaactaga aaaactattc ctaatcaaaa aaaaaaaaaa
2881 a
//