LOCUS BC063566 3555 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens NLR family, CARD domain containing 5, mRNA (cDNA clone
IMAGE:4152674), partial cds.
ACCESSION BC063566
VERSION BC063566.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3555)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3555)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: a Column: 18.
FEATURES Location/Qualifiers
source 1..3555
/db_xref="H-InvDB:HIT000261022"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4152674"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3555
/gene="NLRC5"
/gene_synonym="CLR16.1"
/gene_synonym="FLJ21709"
/gene_synonym="NOD27"
/db_xref="GeneID:84166"
/db_xref="HGNC:HGNC:29933"
CDS <1..2514
/gene="NLRC5"
/gene_synonym="CLR16.1"
/gene_synonym="FLJ21709"
/gene_synonym="NOD27"
/codon_start=1
/product="NLRC5 protein"
/protein_id="AAH63566.1"
/db_xref="GeneID:84166"
/db_xref="HGNC:HGNC:29933"
/translation="GLGALQSLNLSENGLSLDAVLGLVRCFSTLQWLFRLDISFESQH
ILLRGDKTSRDMWATGSLPDFPAAAKFLGFRKRCIPRSLCLSECPLEPPSLTRLCATL
KDCPGPLELQLSCEFLSDQSLETLLDCLPQLPQLSLLQLSQTGLSPKSPFLLANTLSL
CPRVKKVDLRSLHHATLHFRSNEEEEGVCCGRFTGCSLSQEHVESLCWLLSKCKDLSQ
VDLSANLLGDSGLRCLLECLPQVPISGLLDLSHNSISQESALYLLETLPSCPRVREAS
VNLGSEQSFRIHFSREDQAGKTLRLSECSFRPEHVSRLATGLSKSLQLTELTLTQCCL
GQKQLAILLSLVGRPAGLFSLRVQEPWADRARVLSLLEVCAQASGSVTEISISETQQQ
LCVQLEFPRQEENPEAVALRLAHCDLGAHHSLLVGQLMETCARLQQLSLSQVNLCEDD
DASSLLLQSLLLSLSELKTFRLTSSCVSTEGLAHLASGLGHCHHLEELDLSNNQFDEE
GTKALMRALEGKWMLKRLDLSHLLLNSSTLALLTHRLSQMTCLQSLRLNRNSIGDVGC
CHLSEALRAATSLEELDLSHNQIGDAGVQHLATILPGLPELRKIDLSGNSISSAGGVQ
LAESLVLCRRLEELMLGCNALGDPTALGLAQELPQHLRVLHLPFSHLGPGGALSLAQA
LDGSPHLEEISLAENNLAGGVLRFCMELPLLRQIDLVSCKIDNQTAKLLTSSFTSCPA
LEVILLSWNLLGDEAAAELAQVLPKMGRLKRVDLEKNQITALGAWLLAEGLAQGSSIQ
VIRLWNNPIPCDMAQHLKSQEPRLDFAFFDNQPQAPWGT"
BASE COUNT 805 a 991 c 1001 g 758 t
ORIGIN
1 gggctgggag ctctgcagtc cttgaacctc agtgagaacg gtttgtccct ggatgccgtg
61 ttgggtttgg ttcggtgctt ctccactctg cagtggctct tccgcttgga catcagcttt
121 gaaagccaac acatcctcct gagaggggac aagacaagca gggatatgtg ggccactgga
181 tctttgccag acttcccagc tgcagccaag ttcttagggt tccgtaagcg ctgcatcccc
241 aggagcctct gcctcagtga gtgtcctctg gagcccccaa gcctcacccg cctctgtgcc
301 actctgaagg actgcccggg acccctggaa ctgcaattgt cctgtgagtt cctgagtgac
361 cagagcctgg agactctact ggactgctta cctcaactcc ctcagctgag cctgctgcag
421 ctgagccaga cgggactgtc cccgaaaagc cccttcctgc tggccaacac cttaagcctg
481 tgtccacggg ttaaaaaggt ggatctcagg tccctgcacc atgcaacttt gcacttcaga
541 tccaacgagg aggaggaagg cgtgtgctgt ggcaggttca caggctgcag cctcagccag
601 gagcacgtag agtcactctg ctggttgctg agcaagtgta aagacctcag ccaggtggat
661 ctctcagcaa acctgctggg cgacagcgga ctcagatgcc ttctggaatg tctgccgcag
721 gtgcccatct ccggtttgct tgatctgagt cacaacagca tttctcagga aagtgccctg
781 tacctgctgg agacactgcc ctcctgccca cgtgtccggg aggcctcagt gaacctgggc
841 tctgagcaga gcttccggat tcacttctcc agagaggacc aggctgggaa gacactcagg
901 ctaagtgagt gcagcttccg gccagagcac gtgtccaggc tggccaccgg cttgagcaag
961 tccctgcagc tgacggagct cacgctgacc cagtgctgcc tgggccagaa gcagctggcc
1021 atcctcctga gcttggtggg gcgacccgca gggctgttca gcctcagggt gcaggagccg
1081 tgggcggaca gagccagggt tctctccctg ttagaagtct gcgcccaggc ctcaggcagt
1141 gtcactgaaa tcagcatctc cgagacccag cagcagctct gtgtccagct ggaatttcct
1201 cgccaggaag agaatccaga agctgtggca ctcaggttgg ctcactgtga ccttggagcc
1261 caccacagcc ttcttgtcgg gcagctgatg gagacatgtg ccaggctgca gcagctcagc
1321 ttgtctcagg ttaacctctg tgaggacgat gatgccagtt ccctgctgct gcagagcctc
1381 ctgctgtccc tctctgagct gaagacattt cggctgacct ccagctgtgt gagcaccgag
1441 ggcctcgccc acctggcatc tggtctgggc cactgccacc acttggagga gctggacttg
1501 tctaacaatc aatttgatga ggagggcacc aaggcgctga tgagggccct tgaggggaaa
1561 tggatgctaa agaggctgga cctcagtcac cttctgctga acagctccac cttggccttg
1621 cttactcaca gactaagcca gatgacctgc ctgcagagcc tcagactgaa caggaacagt
1681 atcggtgatg tcggttgctg ccacctttct gaggctctca gggctgccac cagcctagag
1741 gagctggact tgagccacaa ccagattgga gacgctggtg tccagcactt agctaccatc
1801 ctgcctgggc tgccagagct caggaagata gacctctcag ggaatagcat cagctcagcc
1861 gggggagtgc agttggcaga gtctctcgtt ctttgcaggc gcctggagga gttgatgctt
1921 ggctgcaatg ccctggggga tcccacagcc ctggggctgg ctcaggagct gccccagcac
1981 ctgagggtcc tacacctacc attcagccat ctgggcccag gtggggccct gagcctggcc
2041 caggccctgg atggatcccc ccatttggaa gagatcagct tggcggaaaa caacctggct
2101 ggaggggtcc tgcgtttctg tatggagctc ccgctgctca gacagataga cctggtttcc
2161 tgtaagattg acaaccagac tgccaagctc ctcacctcca gcttcacgag ctgccctgcc
2221 ctggaagtaa tcttgctgtc ctggaatctc ctcggggatg aggcagctgc cgagctggcc
2281 caggtgctgc cgaagatggg ccggctgaag agagtggacc tggagaagaa tcagatcaca
2341 gctttggggg cctggctcct ggctgaagga ctggcccagg ggtctagcat ccaagtcatc
2401 cgcctctgga ataaccccat tccctgcgac atggcccagc acctgaagag ccaggagccc
2461 aggctggact ttgccttctt tgacaaccag ccccaggccc cttggggtac ttgatggccc
2521 cctcaagacc tttggaatcc agccaagtga tgcacccaaa tgatccacct ttcgcccact
2581 gggataaatg actcaggaaa gaagagcctc ggcagggcgc tctgcactcc acccaggagg
2641 aaggatacgt gtgtcctgct gcagtcctca gggagaactt ttttgggaac caggagctgg
2701 gtctggacaa aggagtaccc tgcattacgt gggatatgtg tgatcaattg gggacatgcg
2761 acacacaatg agggtgtcat gacaatgcat gacacgtacg gttatatgtg gcagtgtgac
2821 cccttgacat gtggcgttac atgaaagtca gtgtggcacg tgttctgtgg catgggtgct
2881 ggcatcccaa gtggcaggat acatgattgt tggtctatat atgacacatg acaaatgtcc
2941 atgtcacagg actcatggct ggccagatga cctcaggctg gcccaagatc taatttatta
3001 atttttaaag caaatacata tttatagatt gtgtgtatgg agcagctaag tcaggaaaag
3061 tcttccgccc gagctgggag gggagagtgt ccatgcactg accagtccag gggctcaagg
3121 gccagggctc tggaacaagc cagggactca gccattaagt cccctcctgc ctcaatcctc
3181 agcctaccca tctataaact tgatgactcc tcccttactt acatactagc ttccaaggac
3241 aggtggaggt agggccagcc tggcgggagt ggagaagccc agtctgtcct atgtaaggga
3301 caaagccagg tctaatggta ctgggtaggg ggcactgcca agacaataag ctaggctact
3361 gggtccagct actactttgg tgggattcag gtgagtctcc atgcacttca catgttaccc
3421 agtgttcttg ttacttccaa ggagaaccaa gaatggctct gtcacactcg aagccaggtt
3481 tgatcaataa acacaatggt attccaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3541 aaaaaaaaaa aaaaa
//