LOCUS BC063531 1218 bp mRNA linear HUM 20-DEC-2004
DEFINITION Homo sapiens SIN3 homolog B, transcription regulator (yeast), mRNA
(cDNA clone IMAGE:4417458), complete cds.
ACCESSION BC063531
VERSION BC063531.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1218)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1218)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: i Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1218
/db_xref="H-InvDB:HIT000260989"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4417458"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1218
/gene="SIN3B"
/gene_synonym="KIAA0700"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
CDS 15..1076
/gene="SIN3B"
/gene_synonym="KIAA0700"
/codon_start=1
/product="SIN3B protein"
/protein_id="AAH63531.1"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
/translation="MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDA
LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA
FLPLGYRIDIPKNGKLNIQSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSV
EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVA
NLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLR
PVSAPAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALF
NQELVSGSELLQLVSPFLG"
BASE COUNT 294 a 346 c 333 g 245 t
ORIGIN
1 ctccgacttc ggacatggcg cacgctggcg gtggcagcgg tggcagcggt gccggcggcc
61 ccgcgggccg ggggctgagc ggcgcccgct ggggtcgctc gggctccgca ggccacgaga
121 agctgccggt gcacgtagaa gacgccctca cctatctgga ccaggtgaag atccgctttg
181 gcagcgaccc tgccacctac aacggcttcc tggagatcat gaaggagttc aaaagccaga
241 gcatcgatac tcctggagtc atcagacgtg tctcgcagct cttccacgag caccctgacc
301 tcattgttgg attcaacgct tttcttcccc tcggatatag aatagacatt cccaagaatg
361 gcaagttaaa catacagtcg cctctgacaa gccaggagaa ttcgcacaac cacggggacg
421 gtgcagagga cttcaagcag caggtgccgt ataaagagga caaaccccag gtgcccctgg
481 agtccgattc cgtggaattc aacaacgcca tcagctatgt gaataagatt aaaacccgct
541 tcctagacca cccagaaatc tacaggtcat tcctggagat cctgcacacg taccagaagg
601 agcagctgaa cacgaggggc cggccattcc gaggcatgtc tgaagaggag gtgttcaccg
661 aggtggccaa cctcttccgg ggccaggagg acctgctctc agagtttgga cagttcctgc
721 ccgaagccaa gcggtctctg ttcacaggaa acgggccgtg cgagatgcac agcgtgcaga
781 agaacgagca cgacaagacc ccggagcaca gcaggaagcg ctcccggccc tcgctcctcc
841 gccccgtgtc tgcacccgcc aagaaaaaaa tgaaacttcg tggtaccaaa gacctgtcca
901 tcgctgcagt ggggaagtac gggactctgc aggaattttc tttctttgac aaggtccgcc
961 gggtgctgaa gagccaggag gtgtatgaaa acttcctccg ctgcatcgca ctcttcaacc
1021 aggagctggt gtctggctct gagctcctgc agctcgtcag cccatttctg gggtgagcag
1081 ctgacttccc agggctccct aggggggttc tgttcctgtc aactccatct acttggtttt
1141 tagttactgt ttttgagcaa tgattgtgct tttctaaaat cctgtttatt aattgaaaaa
1201 aaaaaaaaaa aaaaaaaa
//