LOCUS BC063437 2323 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
IMAGE:5309650), complete cds.
ACCESSION BC063437
VERSION BC063437.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2323)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2323)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: n Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277674
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2323
/db_xref="H-InvDB:HIT000260897"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5309650"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2323
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
CDS 100..504
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/codon_start=1
/product="protocadherin gamma subfamily C, 3"
/protein_id="AAH63437.1"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
/translation="MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 521 a 712 c 598 g 492 t
ORIGIN
1 actcggcgcc cagcgcccaa gcgctaaccc gctgaaagtt tctcagcgaa atctcaggga
61 cgatctggac cccgctgaga ggaactgctt ttgagtgaga tggtcccaga ggcctggagg
121 agcggactgc aagccccgcc caacacggac tggcgtttct ctcaggccca gagacccggc
181 accagcggct cccaaaatgg cgatgacacc ggcacctggc ccaacaacca gtttgacaca
241 gagatgctgc aagccatgat cttggcgtcc gccagtgaag ctgctgatgg gagctccacc
301 ctgggagggg gtgccggcac catgggattg agcgcccgct acggacccca gttcaccctg
361 cagcacgtgc ccgactaccg ccagaatgtc tacatcccag gcagcaatgc cacactgacc
421 aacgcagctg gcaagcggga tggcaaggcc ccagcaggtg gcaatggcaa caagaagaag
481 tcgggcaaga aggagaagaa gtaacatgga ggccaggcca agagccacag ggcagcctct
541 ccccaaccag cccagcttct ccttacctgc acccaggcct cagagtttca gggctaaccc
601 ccagaatact ggtaggggcc aaggccatgc tccccttggg aaacagaaac aagtgcccag
661 tcagcaccta ccccttcccc cccagggggt tgaatatgca aaagcagttc cgctgggaac
721 ccccatccaa tcaactgctg tacccatggg ggtagtgggg ttactgtaga caccaagaac
781 catttgccac accccgttta gttacagctg aactcctcca tcttccaaat caatcaggcc
841 catccatccc atgcctccct cctccccacc ccactccaac agttcctctt tcccgagtaa
901 ggtggttggg gtgttgaagt accaagtaac ctacaagcct cctagttctg aaaagttgga
961 agggcatcat gacctcttgg cctctccttt gattctcaat cttcccccaa agcatggttt
1021 ggtgccagcc ccttcacctc cttccagagc ccaagatcaa tgctcaagtt ttggaggaca
1081 tgatcaccat ccccatggta ctgatgcttg ctggatttag ggagggcatt ttgctaccaa
1141 gcctcttccc aacgccctgg ggaccagtct tctgttttgt ttttcattgt ttgacgtttc
1201 cactgcatgc cttgacttcc cccacctcct cctcaaacaa gagactccac tgcatgttcc
1261 aagacagtat ggggtggtaa gataaggaag ggaagtgtgt ggatgtggat ggtgggggca
1321 tggacaaagc ttgacacatc aagttatcaa ggccttggag gaggctctgt atgtcctcag
1381 gggactgaca acatcctcca gattccagcc ataaaccaat aactaggctg gacccttccc
1441 actacataat agggctcagc ccaggcagcc agctttgggc tgagctaaca ggaccaatgg
1501 attaaactgg catttcagtc caaggaagct cgaagcaggt ttaggaccag gtccccttga
1561 gaggtcagag gggcctctgt gggtgctggg tactccagag gtgccactgg tggaagggtc
1621 agcggagccc cagcaggaag ggtgggccag ccaggccatt cttagtccct gggttgggga
1681 ggcagggagc tagggcaggg accaaatgaa cagaaagtct cagcccagga tggggcttct
1741 tcaacagggc ccctgccctc ctgaagcctc agtccttcac cttgccaggt gccgtttctc
1801 ttccgtgaag gccactgccc aggtccccag tgcgccccct agtggccata gcctggttaa
1861 agttccccag tgcctccttg tgcatagacc ttcttctccc acccccttct gcccctgggt
1921 ccccggccat ccagcggggc tgccagagaa ccccagacct gcccttacag tagtgtagcg
1981 ccccctccct ctttcggctg gtgtagaata gccagtagtg tagtgcggtg tgcttttacg
2041 tgatggcggg tgggcagcgg gcggcgggct ccgcgcagcc gtctgtcctt gatctgcccg
2101 cggcggcccg tgttgtgttt tgtgctgtgt ccacgcgcta aggcgacccc ctcccccgta
2161 ctgacttctc ctataagcgc ttctcttcgc atagtcacgt agctcccacc ccaccctctt
2221 cctgtgtctc acgcaagttt tatactctaa tatttatatg gctttttttc ttcgacaaaa
2281 aaataataaa acgtttcttc tgaaaagcaa aaaaaaaaaa aaa
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