LOCUS BC063423 2000 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens sorting nexin 20, mRNA (cDNA clone IMAGE:5218959), complete cds. ACCESSION BC063423 VERSION BC063423.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2000) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2000) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 135 Row: j Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 33504570 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2000 /db_xref="H-InvDB:HIT000260883" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5218959" /tissue_type="Blood, adult leukocytes" /clone_lib="NIH_MGC_118" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2000 /gene="SNX20" /gene_synonym="SLIC-1" /gene_synonym="SLIC1" /db_xref="GeneID:124460" /db_xref="HGNC:HGNC:30390" CDS 115..423 /gene="SNX20" /gene_synonym="SLIC-1" /gene_synonym="SLIC1" /codon_start=1 /product="SNX20 protein" /protein_id="AAH63423.1" /db_xref="GeneID:124460" /db_xref="HGNC:HGNC:30390" /translation="MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLLHPGPDGHLD THSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVAPAPDATP " BASE COUNT 560 a 558 c 486 g 396 t ORIGIN 1 gtggcagccc ctcggcttgt cgccggagct gagaaccaag agctcgaagg ggccatatga 61 cactcctccc ggacccctgg acacacacag ccctggagac tggagccttg gagcatggca 121 agtccagagc accctgggag ccctggctgc atgggaccca taacccagtg cacggcaagg 181 acccagcagg aagcaccagc cactggcccc gacctcctgc acccaggacc tgacgggcac 241 ttagacacac acagtggcct gagctccaac tccagcatga ccacgcggga gcttcagcag 301 tactggcaga accagaaatg ccgctggaag cacgtcaaac tgctctttga gatcgcttca 361 gctcgcatcg aggagagaaa agtctctaag tttgtggctc cggctcctga cgccacaccc 421 tgatatcaag accctcagat ggagcgagcg ttctgggctg gtcgaagcct gaagccgcag 481 tatgtccttg agtgggtccc cccctaccca tctagctgtt gcccccatgg taagatcaag 541 aaaatgccct cccctccaaa agtccccacg ccgagccctc atctgtcagc tcccaggctc 601 ggccccctca ctagctccag gctgggaggc acagttcagg gcagactgtg gcccctcagc 661 atagcatgga cttagctctg ctctctagtg gctgtcccca tagctagaac tctgttttgg 721 agcagcaaaa ctagttccac ctgctggtag ggctaagttg actcccaaca tgtccccagc 781 gtgttggtgt tgggaacctt gatctagctg ctcgttttct cagtaaccaa agatccctgg 841 cactcctacg atgtctcagg ccttatctag agctggggat acagcagtga ccaggacaga 901 actggtccct gcctcacgga agtgaagtgt cagggggcca ctcccaaagc aaatggaagc 961 tgggacagaa tgatgtcctc agccaggtgg tcagggaagg cttctcagag ggggcgctgt 1021 tcaaagaatc acagagcata caaaggagct ggccctggga gcacagagag gggagaattt 1081 taggcaaaga ggtagcagga gcacagccct gaggcaggaa actacccccc caccaccctc 1141 ggcatcctca gttctggttt gcacccagaa agggggtagg tccaggacac acccggactg 1201 atgtgtcaca ctggctgtgc cagctgagag agtgggctcc aggcaccact aacagagaag 1261 ccttgcaagg caggtccatg caccgcccgc ctccagttac cactcattgc aaaggaaatg 1321 agctgggagc ctgtgtgtgg gccgtgcaga cccttttggt tacaagccac aaaaacccag 1381 gttaatctga tgaggaagga atttattatc tgtaaagtcc aggagcaggc tagctttaca 1441 ccaagcagga tccaaggacc cacactttgt cacctcatat ctctctctct ctcccacttt 1501 cgctttctct gtctcttctt agttctgctt tcctccactg tgccttcgct ctcagagaga 1561 gctctcccct ggcagtgaca agatggctgc agcagctcca gcaacctcag aggactcccc 1621 catccagggt ccttgtgagc tcctcatctg taggatgtgc agtaaacact cacgtgtcct 1681 ttcctgagga gcccagtggc tagggtgggg gctgaggggc agcccctatg ccctcacagt 1741 gcagcaacct tggttagctc acccatcagg gcagacttgg gcagaaatca tgtcttggca 1801 tattgttttg taatctgctt tttaaattgt cactatatat tatgagcatt tccctataat 1861 atacaatatt cttccataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1921 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1981 aaaaaaaaaa aaaaaaaaaa //