LOCUS BC063417 1870 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, J, mRNA
(cDNA clone IMAGE:5222068), complete cds.
ACCESSION BC063417
VERSION BC063417.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1870)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1870)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: j Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860899
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1870
/db_xref="H-InvDB:HIT000260877"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5222068"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1870
/gene="PTPRJ"
/gene_synonym="CD148"
/gene_synonym="DEP1"
/gene_synonym="HPTPeta"
/gene_synonym="R-PTP-ETA"
/gene_synonym="SCC1"
/db_xref="GeneID:5795"
/db_xref="MIM:600925"
CDS 112..1731
/gene="PTPRJ"
/gene_synonym="CD148"
/gene_synonym="DEP1"
/gene_synonym="HPTPeta"
/gene_synonym="R-PTP-ETA"
/gene_synonym="SCC1"
/codon_start=1
/product="PTPRJ protein"
/protein_id="AAH63417.1"
/db_xref="GeneID:5795"
/db_xref="MIM:600925"
/translation="MKPAAREARLPPRSPGLRWALPLLLLLLRLGQILCAGGTPSPIP
DPSVATVATGENGITQISSTAESFHKQNGTGTPQVETNTSEDGESSGANDSLRTPEQG
SNGTDGASQKTPSSTGPSPVFDIKAVSISPTNVILTWKSNDTAASEYKYVVKHKMENE
KTITVVHQPWCNITGLRPATSYVFSITPGIGNETWGDPRVIKVITEPIPVSDLRVALT
GVRKAALSWSNGNGTASCRVLLESIGSHEELTQDSRLQVNISGLKPGVQYNINPYLLQ
SNKTKGDPLGTEGGLDASNTERSRAGSPTAPVHDESLVGPVDPSSGQQSRDTEVLLVG
LEPGTRYNATVYSQAANGTEGQPQAIEFRTNAIQVFDVTAVNISATSLTLIWKVSDNE
SSSNYTYKIHVAGETDSSNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQV
HTPPVPVSDFRVTVVSTTEIGLAWSSHDAESFQMHITQEGAGNSRVEITTNQSIIIGG
LFPGTKYCFEIVPKGPNGTEGASRTVCNRTG"
misc_feature 466..726
/gene="PTPRJ"
/gene_synonym="CD148"
/gene_synonym="DEP1"
/gene_synonym="HPTPeta"
/gene_synonym="R-PTP-ETA"
/gene_synonym="SCC1"
/note="FN3; Region: Fibronectin type 3 domain"
/db_xref="CDD:cd00063"
misc_feature 1222..1446
/gene="PTPRJ"
/gene_synonym="CD148"
/gene_synonym="DEP1"
/gene_synonym="HPTPeta"
/gene_synonym="R-PTP-ETA"
/gene_synonym="SCC1"
/note="FN3; Region: Fibronectin type 3 domain"
/db_xref="CDD:cd00063"
BASE COUNT 502 a 485 c 495 g 388 t
ORIGIN
1 cggaggagga ggcgaaggag acggcaggag gcggcgacga cggtgcccgg gctcgggcgc
61 acggcggggc ccgattcgcg cgtccggggc acgttccagg gcgcgcgggg catgaagccg
121 gcggcgcggg aggcgcggct gcctccgcgc tcgcccgggc tgcgctgggc gctgccgctg
181 ctgctgctgc tgctgcgcct gggccagatc ctgtgcgcag gtggcacccc tagtccaatt
241 cctgaccctt cagtagcaac tgttgccaca ggggaaaatg gcataacgca gatcagcagt
301 acagcagaat cctttcataa acagaatgga actggaacac ctcaggtgga aacaaacacc
361 agtgaggatg gtgaaagctc tggagccaac gatagtttaa gaacacctga acaaggatct
421 aatgggactg atggggcatc tcaaaaaact cccagtagca ctgggcccag tcctgtgttt
481 gacattaaag ctgtttccat cagtccaacc aatgtgatct taacttggaa aagtaatgac
541 acagctgctt ctgagtacaa gtatgtagta aagcataaga tggaaaatga gaagacaatt
601 actgttgtgc atcaaccatg gtgtaacatc acaggcttac gtccagcgac ttcatatgta
661 ttctccatca ctccaggaat aggcaatgag acttggggag atcccagagt cataaaagtc
721 atcacagagc cgatcccagt ttctgatctc cgtgttgccc tcacgggtgt gaggaaggct
781 gctctctcct ggagcaatgg caatggcacc gcctcctgcc gggttcttct tgaaagcatt
841 ggaagccatg aggagttgac tcaagactca agacttcagg tcaatatctc gggcctgaag
901 ccaggggttc aatacaacat caacccgtat cttctacaat caaataagac aaagggagac
961 cccttgggca cagaaggtgg cttggatgcc agcaatacag agagaagccg ggcagggagc
1021 cccaccgccc ctgtgcatga tgagtccctc gtgggacctg tggacccatc ctccggccag
1081 cagtcccgag acacggaagt cctgcttgtc gggttagagc ctggcacccg atacaatgcc
1141 accgtttatt cccaagcagc gaatggcaca gaaggacagc cccaggccat agagttcagg
1201 acaaatgcta ttcaggtttt tgacgtcacc gctgtgaaca tcagtgccac aagcctgacc
1261 ctgatctgga aagtcagcga taacgagtcg tcatctaact atacctacaa gatacatgtg
1321 gcgggggaga cagattcttc caatctcaac gtcagtgagc ctcgcgctgt catccccgga
1381 ctccgctcca gcaccttcta caacatcaca gtgtgtcctg tcctaggtga catcgagggc
1441 acgccgggct tcctccaagt gcacaccccc cctgttccag tttctgactt ccgagtgaca
1501 gtggtcagca cgacggagat cggcttagca tggagcagcc atgatgcaga atcatttcag
1561 atgcatatca cacaggaggg agctggcaat tctcgggtag aaataaccac caaccaaagt
1621 attatcattg gtggcttgtt ccctggaacc aagtattgct ttgaaatagt tccaaaagga
1681 ccaaatggga ctgaaggggc atctcggaca gtttgcaata gaactggatg atttgaacac
1741 ctgcctggaa ttccatcatc tgaaacagag ttggcagata agaatggccc ctatgccaaa
1801 tttggctcat tgtctgtttt tgtaaataaa gttttattgg atcacaaaaa aaaaaaaaaa
1861 aaaaaaaaaa
//