LOCUS BC063301 5323 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens heparan sulfate (glucosamine) 3-O-sulfotransferase
3B1, mRNA (cDNA clone MGC:71688 IMAGE:30343352), complete cds.
ACCESSION BC063301
VERSION BC063301.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5323)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5323)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: f Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5174466.
FEATURES Location/Qualifiers
source 1..5323
/db_xref="H-InvDB:HIT000260822"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71688 IMAGE:30343352"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5323
/gene="HS3ST3B1"
/gene_synonym="30ST3B1"
/gene_synonym="3OST3B1"
/db_xref="GeneID:9953"
/db_xref="HGNC:HGNC:5198"
/db_xref="MIM:604058"
CDS 387..1559
/gene="HS3ST3B1"
/gene_synonym="30ST3B1"
/gene_synonym="3OST3B1"
/codon_start=1
/product="heparan sulfate (glucosamine)
3-O-sulfotransferase 3B1"
/protein_id="AAH63301.1"
/db_xref="GeneID:9953"
/db_xref="HGNC:HGNC:5198"
/db_xref="MIM:604058"
/translation="MGQRLSGGRSCLDVPGRLLPQPPPPPPPVRRKLALLFAMLCVWL
YMFLYSCAGSCAAAPGLLLLGSGSRAAHDPPALATAPDGTPPRLPFRAPPATPLASGK
EMAEGAASPEEQSPEVPDSPSPISSFFSGSGSKQLPQAIIIGVKKGGTRALLEFLRVH
PDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMS
KDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIY
AKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGF
PCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGWD"
BASE COUNT 1278 a 1338 c 1287 g 1420 t
ORIGIN
1 agttcttagg actgcaagga ggcagccccg gcgtgcggcg gtgcgcacag tctagagtgg
61 ccagggcgcg agagtgcaac gtcctcctgg ccccgagcgc gtcgtcgcgc cccgggagca
121 gaccctcgcc cagcagttac cgccgtcccg actttccgtt ccagttgcag ctcctgccgg
181 gcaacatgtc aagagccgcc gccgctacag ctgccgccgc cacctgggga agagcagcag
241 cagcagcggc ggccgcgggc acacgggggc aataaaccga gccacccggg cgtccagcgt
301 gccggggaac cctctctgcg ctcactgccc ggcgggaccc acgccatgtg ctgagccatg
361 tccctggccg cgcccgcggg cagcgcatgg ggcagcgcct gagtggcggc agatcttgcc
421 tcgatgtccc cggccggctc ctaccgcagc cgccgccgcc cccgccgccg gtgaggagga
481 agctcgcgct gctcttcgcc atgctctgcg tctggctcta tatgttcctg tactcgtgcg
541 ccggctcctg cgccgccgcg ccggggctgc tgctcctggg ctctgggtcc cgcgccgcac
601 acgacccgcc agccctggcc acagctccgg acgggacgcc ccccaggctg ccgttccggg
661 cgccgccagc caccccactg gcttcaggca aggagatggc cgagggcgct gcgagcccgg
721 aggagcagag tcccgaggtg ccggactccc caagccccat ctccagcttt ttcagtgggt
781 ctgggagcaa gcagctgccg caggccatca tcatcggcgt gaagaagggc ggcacgcggg
841 cgctgctgga gtttctgcgc gtgcaccccg acgtgcgcgc cgtgggcgcc gagccccatt
901 tcttcgatcg cagctacgac aagggcctcg cttggtaccg ggacctgatg cccagaaccc
961 tggacgggca gatcaccatg gagaagacgc ccagttactt cgtcacgcgg gaggcccctg
1021 cgcgcatctc ggccatgtcc aaggacacca agctcatcgt ggtggtgcgg gacccggtga
1081 ccagggccat ctcggactac acgcagacgc tgtccaagcg gcccgacatc cccaccttcg
1141 agagcttgac gttcaaaaac aggacagcgg gcctcatcga cacgtcgtgg agcgccatcc
1201 agatcggcat ctacgccaag cacctggagc actggctgcg ccacttcccc atccgccaga
1261 tgctcttcgt gagcggcgag cggctcatca gcgacccggc cggggagctg ggccgcgtgc
1321 aagacttcct gggcctcaag aggatcatca cggacaagca cttctacttc aacaagacca
1381 agggcttccc ctgcctgaag aaggcggagg gcagcagccg gccccattgc ctgggcaaga
1441 ccaagggcag gacccatcct gagatcgacc gcgaggtggt gcgcaggctg cgcgagttct
1501 accggccttt caacctcaag ttctaccaga tgaccgggca cgactttggc tgggattgag
1561 cagacccggg ctatgtacct tacccacgtg gcttatctat tgacagagat tatatgtatg
1621 taaaatgtac agaaatctat tttataataa tttattttta attcataagc aattaattca
1681 ctaagctgcc tagccacact ctttagagag ttagcttcat aatctgttaa cattccaaag
1741 tgtttaactc tagtatttcg ttctcttctt cacaattgat ggtgcttcta ttttttcttc
1801 tcccctacct gttatattta aaacaaagaa aagcacaact tgagattttt gttgttacgg
1861 gtattcagcc ttcagtcacc gtctgagttc tccagttgct gcctccttgt cttgtcttgg
1921 gtctcccatt ccagcttccc tgtctcttcc tgcctgtgta cctcgtagga acgctgagct
1981 gcctcaacag ggctgtattc tgaagggcag gcctcatgca gcagcctcct tgcagatgtg
2041 gtgtcccgtc caatgatgta gcctgaaagc cacagcccta gggttctgtc cctccctcca
2101 ttcagcacat ggggaaattt ctcactccct ttacagggac atccacatcc tttttttttc
2161 tttttttttt tttttgagat ggagtcttgc tcttgttgcc caggctgggg cgtaatggtg
2221 tgatatatgc ttaccacaac ctctggctcc cggttcaagc gattctcctg tctcagcctc
2281 ccaagtatct gggattacag gcatgcacca ccatgcctgg ctaattttgt atttttagta
2341 gagacggggt ttcttcatgt tggtcaggct ggtatcaaac tcccgacctc aggtgatccg
2401 cctgccttgg cctccaaagt gttgggatta taggcgtgag ccactgcgcc cgctatccac
2461 atccttctag agtcagaatg gtagggtccg ttgacttcag cttttgattt tgcaggatgg
2521 ccctgtgtcc tcctctgccc cattccctgg ttcattaacc agtttgaagt gtatgtagat
2581 tgttgccccg tctttcccag gtcacatgtg tgagatgcct gggtgctgct tcagaaatca
2641 agatgatctc ctttaatttg catgaaacta caccatgctg cgttccccag gcagacagtt
2701 ctgctttgac acaccaaaga atcccgtagg ctagcagagc cgccagcaca aaccaagggc
2761 gctgggtgtc gagactcaga ggggtcagct gtgtccctcg gcatcagcgt ctaccaaggt
2821 gctgctaggt acagagccag ccagtgttgg gcagcaggct cacagcctca atagggagaa
2881 aagacaaagg cctcaaaatg acaggcagcc tgacagagga aggagtctga cacctcagct
2941 tgatgcgtct ttggaattcc tagctcatct cagaattata tcttagagtg ataatatggg
3001 tggtagccag tggccaaaca gcaagaacta agagtggccc ttgcaaaaaa aggttgggaa
3061 agctgggccc atattgcctg taaacccttg agcctgatgc tcatacagct gtcccttgtt
3121 ttagccaggt cttgacagaa gggttaccag cactgtcact gctctacaga atgctctccc
3181 cgtgcctctc tgttgattta taacagttgg gtaaccagat agcaatatag tggcaattga
3241 gtagccatat agtaatacag gggcagttgg ttaaacatat agcaatatca cataatgata
3301 tgtttaattt aacctcagtt ttttaaacca gaatgcttct accataaaag aattgtgatt
3361 tcagttatac ttccatcaag gaatatgtgg gaagatatac atattgtcaa aatggttggg
3421 atgggatagt tacaaaggac acttttgtat gttgtatggg atcacttgcc tgatagtata
3481 aggaacattg tatgaaaaga tgaaaagata cttcattttt agaaactgat cagagatgtc
3541 actggtcttt aagtgatgtc ttgaaaatcc agtatgtatt tgcccaaaag ttttagccta
3601 catctagcta gcttacactt agcagccaaa ccatcattgt gtaggttctg ttttggagga
3661 agctcatggg ggatctgtgt atttcttagg tttctccctg ttctccaatg ttttatccat
3721 ttcgtagctt ttttactgtc tccagaaagt agtgtgggac ctgcacttag gggaatacca
3781 gaatcatagc gtggttctgc cttcttgatg agtgattgtg aaaaacacct gcataagggt
3841 gctaattggt tgtgtatttt ttcatttatt tgaaatcaaa ctgagaacac ctcttttcgg
3901 tttacagcat aacatggctt gaagtaaaag gcagtatcca agtccttcac ctggtcttgc
3961 cctgtctact ttctgatcat tctgatggtc tgatgtggct gttgatgtgg aactgcagaa
4021 gagttcagag aagagtatgc aacaaagcca taggaaaaca caggagcttt tccctcccct
4081 tcaggtcccc gccctctttc caagctggac aattttttat taagttgttt attccctgcc
4141 ttaaaactga aacaggaaat tttctggtag aaggagggtc atttagtcac gaacactgaa
4201 gtgggtcaaa attctattct gggtcaaatc cttgaattca aacagatgtc cataatcagt
4261 actgatggaa tagagcaagt ttttctatgt aagacaaata aatcaaacat catgtgcatc
4321 tcctcataag ggtctgcaag ggtctgatgg tttaaagttc ctaacagatc tggttgcagc
4381 atctgccgga gcttgcaccc catcatcgga cggtcatctt cctgctgcag aagttaggta
4441 acataagact tagatttctt cctgttctag caatctgcaa gaccaccagg cttaactttt
4501 tagctgccag aagacaaacc cccttttctg tttcggcaat ttgtcctggc acgtgttttg
4561 gacttcctcc gatttacacg aaaagctctg atattcattg gagtacttta ttttttttcc
4621 tcagttttgt ttcttttctc atgtaaaaac aaacaaaaag gtcaacaaaa aaaaattgag
4681 gtttttcttg tttctatcta gttcatgctt tctttgcggt gtttgaacag tagtctgtta
4741 acttagtagg tggtacctgg aaaggtattt taagtatagt gactgtttaa taaatactta
4801 attggatgat ggaggaggag aaattgtttt cttcccagga ttctctttgg gggtcatttt
4861 gtgtgacaga tatattttag acatttggag aaacagtttc agatcctgcc aggatatttt
4921 tgtaaaaaag gaaaatggaa gattccaata aactagaaac agtacgtatc taagatgctg
4981 acacagaagc taatgtgact tttcagctta tcaagaggat ggccaataaa acttaaaggt
5041 gtggttagat gttttctcac ttttgtgaca ttaatttatc actgagtctc attcaaccaa
5101 gtaatctaaa atactgtgca aattctagca gtatgtcttc gataacttgg atgttaggat
5161 agccaatatg tacaaaaaat taaatcaagt attttgtcct atgtataaca caaattaatt
5221 ttacacagag aaagatgttt ctaggcaagt gaaattctgg taattcatac tatttctttg
5281 tatgaacaaa taaaatatat tttgccgaaa aaaaaaaaaa aaa
//