LOCUS BC063280 5012 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens nuclear factor related to kappaB binding protein, mRNA (cDNA clone MGC:71524 IMAGE:5271534), complete cds. ACCESSION BC063280 VERSION BC063280.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5012) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5012) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 133 Row: n Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23346419. FEATURES Location/Qualifiers source 1..5012 /db_xref="H-InvDB:HIT000260801_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71524 IMAGE:5271534" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..5012 /gene="NFRKB" /db_xref="GeneID:4798" /db_xref="MIM:164013" CDS 148..4047 /gene="NFRKB" /codon_start=1 /product="NFRKB protein" /protein_id="AAH63280.1" /db_xref="GeneID:4798" /db_xref="MIM:164013" /translation="MDSLDHMLTDPLELGPCGDGHGTRIMEDCLLGGTRVSLPEDLLE DPEIFFDVVSLSTWQEVLSDSQREHLQQFLPQFPEDSAEQQNELILALFSGENFRFGN PLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQQQYFHRLLKQILASRSDLLEM ARRSGPALPFRQKRPSPSRTPEEREWRTQQRYLKVLREVKEECGDTALSSDEEDLSSW LPSSPARSPSPAVPLRVVPTLSTTDMKTADKVELGDSDLKIMLKKHHEKRKHQPDHPD LLTGDLTLNDIMTRVNAGRKGSLAALYDLAVLKKKVKEKEEKKKKKIKTIKSEAEDLA EPLSSTEGVAPLSQAPSPLAIPAIKEEPLEDLKPCLGINEISSSFFSLLLEILLLESQ ASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPFVE FKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSSDATTPVPRVRTDY VVRPSTGEEKRVFQEQERYRYSQPHKAFTFRMHGFESVVGPVKGVFDKETSLNKAREH SLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICELLKDSQFLAPDVTSTQVNTVVS GALDRLHYEKDPCVKYDIGRKLWIYLHRDRSEEEFERIHQAQAAAAKARKALQQKPKP PSKVKSSSKESSIKVLSSGPSEQSQMSLSDSSMPPTPVTPVTPTTPALPAIPISPPPV SAVNKSGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQTAPSSQAAARVVSHSG SAGLSQVRVVAQPSLPAVPQQSGGPAQTLPQMPAGPQIRVPATATQTKVVPQTVMATV PVKAQTTAATVQRPGPGQTGLTVTSLPATASPVSKPATSSPGTSAPSASTAAVIQNVT GQNIIKQVAITGQLGVKPQTGNSIPLTATNFRIQGKDVLRLPPSSITTDAKGQTVLRI TPDMMATLAKSQVTTVKLTQDLFGTGGNTTGKGISATLHVTSNPVHAADSPAKASSAS APSSTPTGTTVVKVTPDLKPTEASSSAFRLMPALGVSVADQKGKSTVASSEAKPAATI RIVQGLGVMPPKAGQTITVATHAKQGASVASGSGTVHTSAVSLPSMNAAVSKTVAVAS GAASTPISISTGAPTVRQVPVSTTVVSTSQAEKLPTRITVPLSVISQPMKGKSVVTAP IIKGNLGADLSGLGRNIILTTMPAGTKLIAGNKPVSFLTAQQLQQLQQQGQATQVRIQ TVPASHLQQGTASGSSKAVSTVVVTTAPSPKQAPEQQ" BASE COUNT 1241 a 1386 c 1300 g 1085 t ORIGIN 1 gggcggagaa gggctgcggg ttagggggcc ggcgcccgcg gttcaggatt ccagaattgg 61 aaataacggg agggaggacc tggtccagct tcccttcatc aaataaggaa attgacacct 121 ggcgtgagta cctgtggaga agaaacaatg gattccttag accatatgct gacagatcct 181 ctggaacttg gtccgtgtgg agatggccat ggcacgcgca tcatggagga ttgcctcctg 241 ggaggcacca gagttagtct gcccgaggac cttctggagg atcctgagat cttctttgat 301 gttgtcagcc tctcaacatg gcaggaagtg ttaagtgatt ctcaacgtga acacctccag 361 cagtttctgc cccagtttcc tgaagacagt gctgagcagc agaatgaact catcttagcc 421 ttgttcagtg gggagaactt ccgctttgga aaccctctgc acattgccca gaagcttttc 481 cgagacggac actttaaccc cgaggtggtc aagtaccggc agttatgctt caagtcacag 541 tacaagcgct acctcaactc ccagcagcag tatttccatc ggctgctgaa gcaaattctt 601 gcttcccgga gtgatctgct ggagatggcc cggcggagtg gccccgccct tcccttccgg 661 cagaaacgcc cttcaccatc ccgcacacct gaggagcggg agtggcggac ccagcagcgc 721 tacttgaagg tcttaaggga agtgaaagag gagtgtggtg acacagccct gtcatctgat 781 gaagaggatc tcagctcatg gcttccgagc tctccagcac gttctcctag tcctgcggtg 841 cccctgcggg tggtgcccac actttcaacc acggatatga aaactgcaga taaagtagaa 901 ctgggggaca gtgacctgaa gataatgtta aagaagcacc acgagaagcg gaaacatcag 961 ccagatcacc cggacctttt gacaggggac ctgactctca atgacatcat gactcgagta 1021 aatgctggca ggaagggctc tctggcagcc ttatatgact tggctgtcct taaaaaaaag 1081 gttaaggaaa aagaggaaaa gaagaagaag aaaataaaaa cgatcaaatc agaggcagag 1141 gacctggccg agccgctaag cagtactgaa ggggtcgcac ctctctcaca ggccccctct 1201 ccgctggcaa ttcctgctat caaggaagag ccccttgaag acctcaagcc ttgccttgga 1261 atcaatgaaa tatcttccag cttcttctct cttctattag agatcttgct gctggagagt 1321 caggctagcc ttcctatgct agaggagcga gttttggatt ggcagtcatc gccagccagc 1381 tccctcaaca gctggttctc tgcggccccc aactgggctg agttggtact accagccctg 1441 cagtatcttg ctggagaaag tcgagctgtt ccttccagtt tctctccatt tgttgaattc 1501 aaagagaaaa cccagcagtg gaagttgctt ggccaatccc aagataatga aaaggaatta 1561 gctgccctct tccagctatg gctagagacc aaagatcagg ccttctgtaa gcaagaaaat 1621 gaagacagct cagatgccac aacacctgtc cctcgggtaa gaactgacta tgtggtgcgt 1681 cccagcacgg gggaggagaa acgggttttt caggagcagg agcgttacag gtatagccaa 1741 ccccataagg cgttcacctt tcgcatgcac ggctttgagt ctgtggtggg gccagtgaag 1801 ggcgtgtttg acaaggagac ctcgctcaac aaggctcggg agcactccct gctgcgctcc 1861 gaccggcctg cctacgtcac cattctgtct cttgttcggg acgctgcggc tcgactgcct 1921 aatggagaag gcacacgggc agagatctgt gaactgctta aggactccca gtttcttgca 1981 ccagatgtca ccagcactca ggtaaataca gtagtgagtg gtgcactgga tcggctacat 2041 tacgaaaaag atccctgtgt gaaatacgac attggacgaa agctgtggat ctacctgcat 2101 cgtgaccgga gtgaagaaga gtttgagcgg attcaccaag cacaagcagc tgcagctaaa 2161 gccagaaaag ctcttcagca aaaacccaag cccccatcca aggtgaagtc cagtagcaag 2221 gagagctcca taaaggtcct tagcagtggc ccttctgagc agagccagat gagcctcagt 2281 gactccagta tgccacccac cccagtcaca cctgtaaccc ccaccacacc agcattgccc 2341 gccattccca tctcccctcc acctgtatcg gcagtgaaca aaagcggccc ttccacagtc 2401 tcagaaccag ctaagtctag ctcgggtgtt cttctggtgt cttcaccaac aatgccacat 2461 ctgggaacaa tgctttcccc agcttccagc cagactgcac ccagttctca ggctgccgcc 2521 cgggtcgtga gccactctgg ctctgctgga ctgtctcagg tgcgagtggt ggcccagcct 2581 agccttcctg ctgttcccca gcagtcggga gggccggcac agacattgcc acagatgcca 2641 gcaggaccgc agatccgggt tccagccact gccacacaga ccaaagtagt gccccagaca 2701 gtaatggcca ctgtgcccgt caaagcgcag actacggcag ccactgtgca gcggcctgga 2761 cccgggcaga cagggctcac ggtgacaagt ctccctgcca cagccagccc tgtgagtaag 2821 ccagccacga gttctcctgg gacctctgct cccagtgcct ccacggctgc cgtcattcaa 2881 aatgtcacag gacagaacat catcaagcag gtggcaatca ctgggcagct tggtgtgaag 2941 ccccaaacag gcaacagcat tccactcaca gccactaact tccgcatcca gggtaaggat 3001 gtattgcgtc tgccgccctc ttccatcacc acagatgcca agggccagac ggttctgcga 3061 atcactccgg acatgatggc cacattggcc aagtcccagg ttaccacagt caaattgacc 3121 caggacctct tcgggacagg aggcaacact acaggcaaag gcatctctgc caccttacac 3181 gtcacttcca atccagtaca tgcagctgat agccctgcca aggccagttc agccagtgcc 3241 ccttcatcca ctccaacagg taccactgtg gtcaaagtga ctcctgacct caagccaaca 3301 gaagcctcaa gttcggcttt tcgcttgatg ccagctcttg gcgtgagtgt ggctgaccag 3361 aagggaaaaa gcacagtggc ctcttcagaa gcaaaaccag ctgccacgat ccgcatcgtg 3421 cagggactgg gagtgatgcc tcccaaagca ggccagacca tcaccgttgc aacccacgcc 3481 aagcaagggg cctcggtggc cagtgggtct ggaactgtcc atacttcagc ggtgtcctta 3541 cccagtatga atgctgctgt gtccaagact gtagctgtgg cttctggggc tgcaagcacc 3601 cccatcagca tcagcacagg agcccccacc gtgcggcagg tccctgtcag caccacggtt 3661 gtgtccacgt cccaggctga gaagttgcct acacggatca cagttcccct ctctgtgatc 3721 agccagccaa tgaagggcaa gagcgtggtc acagccccca tcatcaaagg caaccttgga 3781 gccgacctca gtgggttggg ccgcaacatc atcctcacaa ctatgccagc aggcactaag 3841 ctcattgctg gcaataagcc tgttagtttc ctcactgctc agcagttgca gcagcttcag 3901 cagcaaggtc aggccacaca ggtgcgcatc cagactgtcc ctgcatccca tctccaacag 3961 ggaacagctt ctggctcctc caaagcagtc tccactgttg ttgtgactac agctccgtct 4021 cctaaacagg cacctgagca acaatgatta tgagagagga tggcttccgt gaaagaccat 4081 gcctggtctg tcctggctga gaagggacca gggaggttgc atcattgttt taagcttgcc 4141 tgttcaaggc agccaggcga ggggtgatgg caacggtggc ctggattcgt ggcctggatt 4201 ctgctgccac gtgccataga ggagcaccct gagaaaggtt cactccaggg ttccaaggtc 4261 tgctctctac caatctagga gaatattctg ttgaaattgc aggaattacc agttacgtcc 4321 aacaagccag agttctgaga gtaagacccc cagggaaggc ttaccagttg cagagtgcac 4381 acagcgaata ggctggttct ccatgaggat tgtatttttt ggcttctggt cttctccatg 4441 actagtggtc tggataggag ttttgtgtcc agaaaatttt atgtaattta tttttttaaa 4501 gaacctgttg tacatctttc tcaaatacaa acttgggctt tagctgcccc ctccactaaa 4561 ccgatgactt acttttttga ctagaatgag aaaatggcaa gaatcttagt aaggtggtag 4621 ccagcttggt aactgcatag taatcgagag gctgtaagat gggaattcat cgtaggcagc 4681 gaggtagagt gggtcccctg aaatgggatt cgcttggcac tgcctcttaa agataggggt 4741 gttgggatct tgattgtggc cgcccccccc agctttacct gcccactttg tccttcttgg 4801 caagcctgtt cacatggacg tccagagcca gtggacagag aggaggggac ggacagcaga 4861 ggtgctgctt ttgcagcaga aactttgttg cagttcagag tataccttct gctctgctcc 4921 agagcaagag ttgcaaacca ggcccttggg gctggccatt tgtttttgta aataaagttt 4981 tattggaaca caaagaaaaa aaaaaaaaaa aa //