LOCUS BC063261 6757 bp mRNA linear ROD 18-MAR-2009 DEFINITION Mus musculus small nuclear ribonucleoprotein 200 (U5), mRNA (cDNA clone MGC:67133 IMAGE:6408607), complete cds. ACCESSION BC063261 VERSION BC063261.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 6757) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 6757) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Jim Lin, University of Iowa cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 125 Row: g Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40018609. FEATURES Location/Qualifiers source 1..6757 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /clone="MGC:67133 IMAGE:6408607" /tissue_type="Brain, enriched mouse brain 12.5dp" /clone_lib="NIH_BMAP_FO0" /lab_host="DH10B" /note="Vector: pYX-ASC" gene 1..6757 /gene="Snrnp200" /gene_synonym="HELIC2" /gene_synonym="U5-200-KD" /gene_synonym="U5-200KD" /db_xref="GeneID:320632" /db_xref="MGI:MGI:2444401" CDS 91..6501 /gene="Snrnp200" /gene_synonym="HELIC2" /gene_synonym="U5-200-KD" /gene_synonym="U5-200KD" /codon_start=1 /product="small nuclear ribonucleoprotein 200 (U5)" /protein_id="AAH63261.1" /db_xref="GeneID:320632" /db_xref="MGI:MGI:2444401" /translation="MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLV GKLEGTRMGDKAQRTKPQMQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIIY KPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLL LGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYG EVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFY DDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLL ASAQSEPEKERIVGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLE TMDLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPAL KPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAG KTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITV AELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDEIHLLHDDR GPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRP VPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRD MCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA GRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAK DAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKY DKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSA GRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKK NFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTI TPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPL PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVY ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL SNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITK HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQY YNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDH LSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKV RGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLS RMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDS YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPN IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSN SLISIKRLTLQQKAKVKLDFVAPATGGHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD SDSD" BASE COUNT 1751 a 1644 c 1795 g 1567 t ORIGIN 1 gcgttgtacc tgttgtgcca gggcggttcg ctgaagcggt tcggagcgtg aagaagagtg 61 gaaccctgag ttcccggagc atcagcagcc atggcggatg tgactgcccg cagtttgcag 121 tacgagtaca aggcgaactc aaatcttgtg ctccaagctg accgctctct cattgaccgg 181 acccgccggg atgaaccgac gggagaggtt ctgtccctgg ttgggaagtt ggagggaacc 241 cgaatgggag ataaggctca acggaccaaa ccacagatgc aggaagaaag acgggccaag 301 aggagaaaac gtgatgagga ccggcatgac atgaacaaga tgaaaggcta cacgctgctg 361 tctgagggca ttgatgagat ggtgggcatc atctacaagc ctaagacgaa ggagacccga 421 gagacctacg aggtgctgct cagcttcatc caggctgcgc tgggagatca gcctcgagat 481 attctttgtg gagcagctga tgaagtcctt gctgtgctga agaatgaaaa gcttcgagac 541 aaggagagaa gacgggagat tgacctgctg ctgggtcaga cagatgatac cagataccat 601 gtgctggtaa acctgggcaa gaagatcaca gactacggtg gcgacaagga gatacagaat 661 atggatgaca acattgatga gacttatggt gtgaacgtgc agtttgagtc tgatgaggag 721 gaaggtgatg aagatgtgta tggggaagtc cgagaagaag cttctgatga tgacatggaa 781 ggggacgaag ctgttgtgcg ctgcaccctc tctgctaatc ttgtagcctc aggcgaactg 841 atgagttcta agaagaagga tttgcaccct cgggatatcg atgccttctg gctgcagcga 901 cagctcagtc gtttctatga tgatgccatt gtgtcacaga agaaggcaga tgaggtgttg 961 gagattttga agacagcaag tgatgaccga gaatgtgaga accaactggt tttgctcctt 1021 ggtttcaaca cgtttgactt cattaaagtg ttgcggcagc acaggatgat gattttatac 1081 tgtaccttgt tggccagtgc tcagagtgaa cctgaaaagg agaggatcgt gggaaagatg 1141 gaagctgatc cagagctctc caagttcctc tatcagctcc atgagactga gaaggaggac 1201 ctgatcagag aagaaaggtc ccggagagag agagtccgtc agtcccgaat ggacacagat 1261 ctggaaacca tggatttgga ccagggtgga gaggctctgg ctccaaggca ggttctggat 1321 ttggaggacc ttgtttttac ccaaggaagc cacttcatgg ccaataagcg ctgccagctt 1381 cctgacgggt ccttccgacg ccagcgtaaa ggctatgaag aggtgcatgt gcctgctttg 1441 aagcccaagc cctttggctc agaagaacaa ttgctcccgg tggagaagct gccaaagtat 1501 gcccaggcag gatttgaggg cttcaaaacg ctgaaccgga tccagagtaa gctctaccgt 1561 gctgccctgg agactgatga gaacctgctg ctgtgtgctc ccactggtgc gggcaagacc 1621 aacgtggccc tgatgtgtat gctccgagag atagggaaac acatcaacat ggacggcaca 1681 atcaatgtgg atgacttcaa gatcatctac atagctccca tgcggtccct ggtccaggag 1741 atggtgggca gttttggaaa gcgcctggcc acatatggca tcactgttgc tgagctgact 1801 ggggatcacc agctatgcaa ggaggaaatc agtgccacac agattatcgt ctgcacccct 1861 gagaagtggg acatcatcac acgcaagggc ggggagcgca cctacaccca gctggtgcga 1921 ctcattgtct tggatgagat ccatcttcta catgatgaca gaggtcctgt cttagaagct 1981 ttggtggcca gggccatccg aaacattgag atgacccaag aagatgtccg actcattggt 2041 ctcagtgcta ccctccccaa ctatgaagat gtggccacct ttctgcgagt cgaccctgct 2101 aagggcctct tctactttga taacagcttc cgccccgtgc ctctggaaca aacatatgtg 2161 ggcatcacag agaaaaaagc tatcaaacgt ttccagatca tgaatgaaat agtctatgag 2221 aaaatcatgg aacatgctgg aaaaaatcag gtgctcgtgt ttgtccattc tcgaaaagaa 2281 actgggaaga cagcaagggc aatccgtgac atgtgtctgg agaaggacac tttgggtctg 2341 tttcttcgcg agggttctgc ctccactgaa gtccttcgta cagaagcaga gcagtgcaag 2401 aacttggagc tgaaggatct tttgccctat ggctttgcta ttcatcatgc aggcatgact 2461 agagttgacc gaacacttgt agaagatctt tttgctgaca agcatattca ggttttagtt 2521 tccaccgcaa ctctggcgtg gggtgtaaat cttcctgcac atacagtcat cattaaaggt 2581 acccaagtgt acagtccaga gaaggggcgt tggacagagc tgggagcact ggatatcctg 2641 cagatgctgg gccgtgctgg acggccgcag tatgacacca agggtgaagg catcctcatc 2701 acatcccatg gggagctcca gtactacctc tccctcctca accagcagct gcctatcgag 2761 agccagatgg tctccaagct gcctgacatg ctcaatgcgg aaattgttct gggcaatgtc 2821 cagaatgcaa aggatgcagt gaactggctg ggctatgcct acctatacat ccgaatgctc 2881 cggtccccta ccctctatgg catttctcat gatgacctca agggagatcc cttgctggac 2941 cagcgccgac tcgatcttgt tcacactgct gccttgatgc tggacaagaa caatctggtc 3001 aagtacgaca agaagacagg caacttccag gtgacagaac ttggccggat agcaagtcac 3061 tactatatca ccaatgatac tgtgcagacc tacaaccagc tgctgaagcc tactctgagt 3121 gagattgagc ttttccgagt gttctccttg tcctcagagt tcaagaacat cactgtaaga 3181 gaggaggaga agctggagct gcagaagttg ctggagagag tgcccatccc tgtaaaggag 3241 agcattgagg aacccagcgc taagatcaac gtgcttctcc aagccttcat ctcacagctg 3301 aaactcgaag gctttgcgct gatggctgac atggtgtatg tgacccagtc ggctggccgg 3361 ttgatgcgtg caatcttcga aattgtcctg aaccgaggtt gggcacagct tacagataag 3421 accctgaatc tctgcaagat gattgacaag cgcatgtggc agtccatgtg tcctcttcgc 3481 cagttccgaa aacttcctga ggaagtagtg aagaagattg agaagaaaaa cttccccttt 3541 gagcggctgt atgacttgaa tcataatgag ataggtgaac ttattcgaat gccgaagatg 3601 gggaagacca tccacaagta tgtccatctt ttccccaagt tggagttgtc agtgcacctg 3661 cagcctatta cacgctctac gctgaaagta gagctgacta tcacaccaga tttccagtgg 3721 gatgaaaagg tccatggttc gtcagaggca ttttggattc tggtggagga tgtggacagt 3781 gaggtgattc tgcaccatga atattttctg ctgaaggcca agtatgccca ggatgagcac 3841 ctcatcacgt tctttgttcc agtctttgaa ccactacctc ctcagtactt cattcgagta 3901 gtgtctgatc gctggctctc ttgtgagacg cagctacctg tctccttccg gcatctgatc 3961 ctaccagaga agtacccacc tccaaccgaa ctgttggacc tgcagccatt gcctgtgtct 4021 gctctgagaa acagtgcttt tgagagcctt taccaagata aatttccttt cttcaatccc 4081 atccagactc aagtatttaa taccgtgtac aacagtgatg ataacgtgtt tgtgggggcc 4141 cccacgggca gcgggaagac tatctgcgcg gagtttgcca tccttcggat gctgctgcag 4201 aattctgagg gacgctgtgt ctacattacc cctatggagg ctctggcaga gcaggtatac 4261 atggactggt atgagaagtt tcaggacagg ctcaacaaga aggtagtgct gctgacgggg 4321 gagaccagca cagatctgaa gctcctgggc aaaggcaaca tcatcatcag tacccctgag 4381 aagtgggaca tcctctctcg gaggtggaag cagcgcaaga acgtccagaa cattaacctc 4441 tttgtggtgg atgaggtcca ccttattggg ggcgagaatg ggcctgtctt ggaagtgatc 4501 tgctcccgga tgcgctacat ctcctcccag attgagcggc ccattcgcat tgtggcactt 4561 agctcctcac tctccaatgc caaggatgtg gctcactggc tgggctgcag tgccacctcc 4621 accttcaact tccatcctaa tgtgcgccct gtacctttgg aactgcacat ccagggcttc 4681 aacatcagtc acacacagac tcgcctgctc tctatggcca agcctgtgta ccatgctatc 4741 accaaacact cacccaagaa gcctgtcatc gtttttgtcc catctcgtaa gcagacccgc 4801 ctcactgcaa tagacatcct cactacctgt gcagcagaca tccagcggca gaggttcctg 4861 cactgcaccg agaaggacct gatcccttac ctggagaagc tcagtgacag cacactcaaa 4921 gagaccctgt taaatggggt gggctacctg catgaaggcc tgagccccat ggagaggcgc 4981 ctggtagagc agctcttcag ctccggggct atccaggtgg tggtagcttc tcggagtctc 5041 tgctggggca tgaatgttgc tgctcatcta gtgatcatca tggatactca gtactacaat 5101 ggcaagatcc atgcctatgt ggattacccc atctatgatg tgcttcagat ggtgggccat 5161 gccaaccggc ccctgcagga tgatgagggg cgctgtgtca tcatgtgtca gggctctaaa 5221 aaggattttt tcaaaaaatt tttgtatgag ccattgccag tagagtctca cctggaccac 5281 tgtatgcatg accacttcaa tgctgagatt gtcaccaaga ccattgagaa caagcaggat 5341 gctgtggact acctcacctg gacctttctg tatcgcagaa tgacacagaa ccccaattac 5401 tacaacctgc aggggatatc ccatcgtcat ctgtctgacc acctgtcaga gctggtggag 5461 cagaccctca gtgacctgga gcagtccaaa tgcatcagta ttgaggacga gatggatgtg 5521 gcccctctga acctgggcat gattgctgcc tactattaca taaactacac caccattgag 5581 ctcttcagca tgtctctgaa tgctaaaacc aaggttcgag gacttattga gatcatttcc 5641 aatgcagcag agtatgagaa cattccaatc aggcatcatg aagacaacct cctgcgccag 5701 ttggctcaga aggtccccca caagctgaat aaccccaagt tcaatgatcc acatgtgaag 5761 accaatctgc tgctgcaggc tcacctgtcc cgcatgcagc taagtgctga actacagtca 5821 gacacagagg agatccttag taaggcaatc cggctaattc aggcctgtgt ggatgtactc 5881 tccagcaatg ggtggcttag tcctgctctg gcagccatgg aactggccca gatggtcacc 5941 caagccatgt ggtctaagga ctcttacctg aagcagctgc cacacttcac ctcagagcat 6001 atcaaacgtt gcacagataa gggagtggag agtgtttttg acatcatgga gatggaggat 6061 gaagaacgga atgcattgct tcagttgact gacagccaga ttgcagatgt ggcccgcttc 6121 tgtaaccgct acccgaatat tgaactgtcc tatgaagtgg tggataaaga cagcatccgc 6181 agtggcggac cagttgtggt gctagtgcaa ctggagcgag aggaggaagt cacgggccca 6241 gttattgcac ctctcttccc acagaaacgt gaagagggct ggtgggttgt gattggagac 6301 gccaagtcca acagcctcat ctccatcaag aggctgaccc tgcagcagaa agccaaggtg 6361 aagctagact ttgtggcccc agccacaggt ggccacaact ataccctgta cttcatgagt 6421 gacgcataca tgggctgtga ccaggagtat aagttcagtg tggatgtgaa agaagctgag 6481 acagacagtg attcagattg agtctgaggc actgaacctg aaaacaggaa tgtggactag 6541 gtctgtcagg ctgaggtctg gccattcagg ccgctgctgt ccccagtcca catccagtta 6601 ctgtcccact ttggacctta gttcaaggtc tgggtcttgt attttcaagt gtcatgtcaa 6661 gcatgaactg tacaatattt ggaggcatgg ttttctagtt ccttgagtca gacattctaa 6721 taaataattt gaaaaaacta aaaaaaaaaa aaaaaaa //