LOCUS BC063007 1733 bp mRNA linear HUM 02-JUL-2005 DEFINITION Homo sapiens AF4/FMR2 family, member 4, mRNA (cDNA clone IMAGE:5213733), complete cds. ACCESSION BC063007 VERSION BC063007.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1733) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1733) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 135 Row: i Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7656878 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1733 /db_xref="H-InvDB:HIT000260717" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5213733" /tissue_type="Blood, adult leukocytes" /clone_lib="NIH_MGC_118" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1733 /gene="AFF4" /gene_synonym="AF5Q31" /gene_synonym="MCEF" /db_xref="GeneID:27125" /db_xref="MIM:604417" CDS 260..1321 /gene="AFF4" /gene_synonym="AF5Q31" /gene_synonym="MCEF" /codon_start=1 /product="AFF4 protein" /protein_id="AAH63007.1" /db_xref="GeneID:27125" /db_xref="MIM:604417" /translation="MNREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYKVTSK EDKLSSRIQSMLGNYDEMKDFIGDRSIPKLVAIPKPTVPPSADEKSNPNFFEQRHGGS HQSSKWTPVGPAPSTSQSQKRSSGLQSGHSSQRTSAGSSSGTNSSGQRHDRESYNNSG SSSRKKGQHGSEHSKSRSSSPGKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDA NWDSPSRVPFSSGQHSTQSFPPSLMSKSNSMLQKPTAYVRPMDGQESMEPKLSSEHYS SQSHGNSMTELKPSSKAHLTKLKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAI HTPCKTEPSKFPFPTKVSK" BASE COUNT 524 a 446 c 405 g 358 t ORIGIN 1 ccgggcccga ccgtcatgga gcggtgcggg gcctacgcct gttccgtgtg aggcgcatcg 61 ctgccgccgc cgccgacgcc gccttcgttt gtcgaggcct ccggaacccc cgccgcctcc 121 cggagcccct cgcccttggc agcctgtcac cgccccctgg gcgggctcga atgcgcgtcc 181 ggtgaaggtg caggcccggc gccgccactg ccgcagccag gagatggttc gggcctagcg 241 gagccgggac tggagcaaca tgaaccgtga agaccggaat gtgctgcgta tgaaagaacg 301 ggaaaggcgg aatcaggaaa ttcagcaggg cgaagacgcc ttcccaccta gctctcctct 361 ctttgcagag ccatacaaag ttactagcaa agaagataag ttatcaagtc gtattcagag 421 tatgcttgga aactacgatg aaatgaagga tttcatagga gacagatcta taccaaagct 481 tgttgcaatt cccaagccta cagtaccacc atcagcagat gaaaaatcta acccaaattt 541 ctttgaacag agacatggag gctctcatca gagtagcaaa tggactccag taggacccgc 601 acccagcact tctcagtctc agaaacggtc ctcaggctta cagagtggac atagtagcca 661 gcggaccagc gcaggtagca gtagtggcac taacagtagt ggtcagaggc acgaccgtga 721 gtcatataac aatagtggga gcagtagccg gaaaaaaggc cagcatggat cagaacactc 781 caaatcacgt tcttccagcc ctggaaaacc ccaggctgtt tcttcattaa actctagtca 841 ttccaggtct catgggaatg atcaccatag caaggaacat caacgctcca aatcacctcg 901 ggaccctgat gcaaactggg attctccttc ccgtgtacct ttttcaagtg ggcagcactc 961 aactcaatct ttcccaccct cattgatgtc aaagtccaat tcaatgttac agaaacccac 1021 tgcctatgtg cggcccatgg acggacagga gtccatggaa ccaaagctgt cctctgagca 1081 ctacagcagc caatcccatg gcaacagcat gactgagctg aagcccagca gcaaagcaca 1141 tctcaccaag ctgaaaatac cttcccaacc actggatgca tcagcttctg gtgatgtgag 1201 ctgtgtggat gaaatcctaa aagagatgac gcattcatgg cctccccctc taacggctat 1261 tcatacacca tgcaaaacag aaccttccaa atttcctttt ccaactaagg taagtaaata 1321 aaatgtatct ttcataatgt aagaaaactc taaatggctt gactaaaatc atatggatta 1381 aaaattgtct tgccattcct attctagtgg gagacagaca gtaaataagt gaataaatag 1441 ataaattcag atagtgacaa ctgttatgaa gataattagc agggtaatgg aactgagagc 1501 atcttggatc aagaggtatt aagaaagctt tgaaggcaat atgcgagaga gatttaaaag 1561 acattaatac agccggacac ggtggctcac tcctgtaatc ccagcacttt ggaaggctga 1621 gccaagagac tctcttgagg ccaggagttt gcgaccagcc tggtcaacat agcaagaccc 1681 tgtctctacc aaaaattgga aggaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa //