LOCUS BC063000 1822 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens platelet-activating factor receptor, mRNA (cDNA clone
MGC:74702 IMAGE:5176867), complete cds.
ACCESSION BC063000
VERSION BC063000.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1822)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1822)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47777315.
FEATURES Location/Qualifiers
source 1..1822
/db_xref="H-InvDB:HIT000260710"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74702 IMAGE:5176867"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1822
/gene="PTAFR"
/gene_synonym="PAFR"
/db_xref="GeneID:5724"
/db_xref="HGNC:HGNC:9582"
/db_xref="MIM:173393"
CDS 128..1156
/gene="PTAFR"
/gene_synonym="PAFR"
/codon_start=1
/product="platelet-activating factor receptor"
/protein_id="AAH63000.1"
/db_xref="GeneID:5724"
/db_xref="HGNC:HGNC:9582"
/db_xref="MIM:173393"
/translation="MEPHDSSHMDSEFRYTLFPIVYSIIFVLGVIANGYVLWVFARLY
PCKKFNEIKIFMVNLTMADMLFLITLPLWIVYYQNQGNWILPKFLCNVAGCLFFINTY
CSVAFLGVITYNRFQAVTRPIKTAQANTRKRGISLSLVIWVAIVGAASYFLILDSTNT
VPDSAGSGNVTRCFEHYEKGSVPVLIIHIFIVFSFFLVFLIILFCNLVIIRTLLMQPV
QQQRNAEVKRRALWMVCTVLAVFIICFVPHHVVQLPWTLAELGFQDSKFHQAINDAHQ
VTLCLLSTNCVLDPVIYCFLTKKFRKHLTEKFYSMRSSRKCSRATTDTVTEVVVPFNQ
IPGNSLKN"
BASE COUNT 424 a 532 c 448 g 418 t
ORIGIN
1 ttgccagaca gcatagaggc tgaggctggg gccaggaccc agacagagac acacggtcac
61 tgcagctgaa gccgctgccc ctgctacagg caccaccagg accagctgat cattccagcc
121 cacagcaatg gagccacatg actcctccca catggactct gagttccgat acactctctt
181 cccgattgtt tacagcatca tctttgtgct cggggtcatt gctaatggct acgtgctgtg
241 ggtctttgcc cgcctgtacc cttgcaagaa attcaatgag ataaagatct tcatggtgaa
301 cctcaccatg gcggacatgc tcttcttgat caccctgcca ctttggattg tctactacca
361 aaaccagggc aactggatac tccccaaatt cctgtgcaac gtggctggct gccttttctt
421 catcaacacc tactgctctg tggccttcct gggcgtcatc acttataacc gcttccaggc
481 agtaactcgg cccatcaaga ctgctcaggc caacacccgc aagcgtggca tctctttgtc
541 cttggtcatc tgggtggcca ttgtgggagc tgcatcctac ttcctcatcc tggactccac
601 caacacagtg cccgacagtg ctggctcagg caacgtcact cgctgctttg agcattacga
661 gaagggcagc gtgccagtcc tcatcatcca catcttcatc gtgttcagct tcttcctggt
721 cttcctcatc atcctcttct gcaacctggt catcatccgt accttgctca tgcagccggt
781 gcagcagcag cgcaacgctg aagtcaagcg ccgggcgctg tggatggtgt gcacggtctt
841 ggcggtgttc atcatctgct tcgtgcccca ccacgtggtg cagctgccct ggacccttgc
901 tgagctgggc ttccaggaca gcaaattcca ccaggccatt aatgatgcac atcaggtcac
961 cctctgcctc cttagcacca actgtgtctt agaccctgtt atctactgtt tcctcaccaa
1021 gaagttccgc aagcacctca ccgaaaagtt ctacagcatg cgcagtagcc ggaaatgctc
1081 ccgggccacc acggatacgg tcactgaagt ggttgtgcca ttcaaccaga tccctggcaa
1141 ttccctcaaa aattagtccc tgcttccagg cctgaagtct tctcctccat gaacatcatg
1201 gactgagctg ggggaagaag ggatatctac tgtggtctgg gcaccacctc tgtgggcact
1261 ggtgggccat tagatttgga ggctacctca cctgggcagg gatgatggca gagccaggct
1321 gttggaaaat ccagaactca aatgagcccc ttcatccgcc tgtgggcgca tactacagta
1381 actgtgactg atgactttat cctgagtccc ttaatcttat ggggccggaa ggaatgtcag
1441 ggccaggtgc agaccttggg ggaagacttt aaaccaccta gttctccccg atggggcatc
1501 ggtctaaagc tttgggggag tgggcgcagt ggctcacacc tgtaatccca gcactttggg
1561 aggccgaggt gggcagatca tgggtcaaga gatcgagacc atcctggcca acattgtaaa
1621 accccatctc tactaaaaca tacaaaaatt agccgggcat ggtggcacac gcctgtagtc
1681 ccagctactc aggaggctga ggcaggagaa tcgcttgaac ctgggaggca gaggttgcag
1741 tgaacctaga ttgcaccatt gcactctagc ctggcaacag agcgagattc catctcaaaa
1801 aaaaaaaaaa aaaaaaaaaa aa
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