LOCUS BC062984 2557 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
domain (TM) and short cytoplasmic domain, (semaphorin) 4C, mRNA
(cDNA clone IMAGE:4561275), partial cds.
ACCESSION BC062984
VERSION BC062984.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2557)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2557)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: d Column: 16.
FEATURES Location/Qualifiers
source 1..2557
/db_xref="H-InvDB:HIT000260694"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4561275"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2557
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
CDS <1..1634
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/codon_start=3
/product="SEMA4C protein"
/protein_id="AAH62984.1"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
/translation="QLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQL
EEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILN
FVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK
AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCAD
CVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNIT
VVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGA
YHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLL
VLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSD
GSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGED
RGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV"
BASE COUNT 494 a 732 c 791 g 540 t
ORIGIN
1 ggcagctcta cttcaaccag ctgcaggcga tgcacaccct gcaggacacc tcctggcaca
61 acaccacctt ctttggggtt tttcaagcac agtggggtga catgtacctg tcggccatct
121 gtgagtacca gttggaagag atccagcggg tgtttgaggg cccctataag gagtaccatg
181 aggaagccca gaagtgggac cgctacactg accctgtacc cagccctcgg cctggctcgt
241 gcattaacaa ctggcatcgg cgccacggct acaccagctc cctggagcta cccgacaaca
301 tcctcaactt cgtcaagaag cacccgctga tggaggagca ggtggggcct cggtggagcc
361 gccccctgct cgtgaagaag ggcaccaact tcacccacct ggtggccgac cgggttacag
421 gacttgatgg agccacctat acagtgctgt tcattggcac aggagacggc tggctgctca
481 aggctgtgag cctggggccc tgggttcacc tgattgagga gctgcagctg tttgaccagg
541 agcccatgag aagcctggtg ctatctcaga gcaagaagct gctctttgcc ggctcccgct
601 ctcagctggt gcagctgccc gtggccgact gcatgaagta tcgctcctgt gcagactgtg
661 tcctcgcccg ggacccctat tgcgcctgga gcgtcaacac cagccgctgt gtggccgtgg
721 gtggccactc tggatctcta ctgatccagc atgtgatgac ctcggacact tcaggcatct
781 gcaacctccg tggcagtaag aaagtcaggc ccactcccaa aaacatcacg gtggtggcgg
841 gcacagacct ggtgctgccc tgccacctct cctccaactt ggcccatgcc cgctggacct
901 ttgggggccg ggacctgcct gcggaacagc ccgggtcctt cctctacgat gcccggctcc
961 aggccctggt tgtgatggct gcccagcccc gccatgccgg ggcctaccac tgcttttcag
1021 aggagcaggg ggcgcggctg gctgctgaag gctaccttgt ggctgtcgtg gcaggcccgt
1081 cggtgacctt ggaggcccgg gcccccctgg aaaacctggg gctggtgtgg ctggcggtgg
1141 tggccctggg ggctgtgtgc ctggtgctgc tgctgctggt gctgtcattg cgccggcggc
1201 tgcgggaaga gctggagaaa ggggccaagg ctactgagag gaccttggtg taccccctgg
1261 agctgcccaa ggagcccacc agtcccccct tccggccctg tcctgaacca gatgagaaac
1321 tttgggatcc tgtcggttac tactattcag atggctccct taagatagta cctgggcatg
1381 cccggtgcca gcccggtggg gggccccctt cgccacctcc aggcatccca ggccagcctc
1441 tgccttctcc aactcggctt cacctggggg gtgggcggaa ctcaaatgcc aatggttacg
1501 tgcgcttaca actaggaggg gaggaccggg gagggctcgg gcaccccctg cctgagctcg
1561 cggatgaact gagacgcaaa ctgcagcaac gccagccact gcccgactcc aaccccgagg
1621 agtcatcagt atgaggggaa cccccaccgc gtcggcggga agcgtgggag gtgtagctcc
1681 tacttttgca caggcaccag ctacctcagg gacatggcac gggcacctgc tctgtctggg
1741 acagatactg cccagcaccc acccggccat gaggacctgc tctgctcagc acgggcactg
1801 ccacttggtg tggctcacca gggcaccagc ctcgcagaag gcatcttcct cctctctgtg
1861 aatcacagac acgcgggacc ccagccgcca aaacttttca aggcagaagt ttcaagatgt
1921 gtgtttgtct gtatttgcac atgtgtttgt gtgtgtgtgt atgtgtgtgt gcacgcgcgt
1981 gcgcgcttgt ggcatagcct tcctgtttct gtcaagtctt cccttggcct gggtcctcct
2041 ggtgagtcat tggagctatg aaggggaagg ggtcgtatca ctttgtctct cctaccccca
2101 ctgccccgag tgtcgggcag cgatgtacat atggaggtgg ggtggacagg gtgctgtgcc
2161 ccttcagagg gagtgcaggg cttggggtgg gcctagtcct gctcctaggg ctgtgaatgt
2221 tttcagggtg gggggaggga gatggagcct cctgtgtgtt tggggggaag ggtgggtggg
2281 gcctcccact tggccccggg gttcagtggt attttatact tgccttcttc ctgtacaggg
2341 ctgggaaagg ctgtgtgagg ggagagaagg gagagggtgg gcctgctgtg gacaatggca
2401 tactctcttc cagccctagg aggagggctc ctaacagtgt aacttattgt gtccccgcgt
2461 atttatttgt tgtaaatatt tgagtatttt tatattgaca aataaaatgg agaaaatgaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//