LOCUS BC062779 1207 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 3,
mRNA (cDNA clone IMAGE:4688383), complete cds.
ACCESSION BC062779
VERSION BC062779.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1207)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 51 Row: i Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1207
/db_xref="H-InvDB:HIT000260670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4688383"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1207
/gene="ABCA3"
/gene_synonym="ABC-C"
/gene_synonym="ABC3"
/gene_synonym="EST111653"
/gene_synonym="LBM180"
/db_xref="GeneID:21"
/db_xref="MIM:601615"
CDS 385..1014
/gene="ABCA3"
/gene_synonym="ABC-C"
/gene_synonym="ABC3"
/gene_synonym="EST111653"
/gene_synonym="LBM180"
/codon_start=1
/product="ABCA3 protein"
/protein_id="AAH62779.1"
/db_xref="GeneID:21"
/db_xref="MIM:601615"
/translation="MAVLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRL
KIQSENVPNATIYPGQSIQELPLFFTFPPPGDTWELAYIPSHSDAAKTVTETVRRALV
INMRVRGFPSEKDFEDYIRYDNCSSSVLAAVVFEHPFNHSKEPLPLAVKYHLRFSYTR
RNYMWTQTGSFFLKETEGWHTTSLFPLFPNPGPREPTSPDGGEPGEKLG"
BASE COUNT 279 a 354 c 298 g 276 t
ORIGIN
1 ggggagtagt cctgaaggga gacctgctgt gtggagcctc ttctgggacc cagccatgag
61 tgtggagctg agcaactgaa cctgaaactc ttccactgtg agtcaaggag gcttttccgc
121 acatgaagga cgctgagcgg gaaggactcc tctctgcctg cagttgtagc gagtggacca
181 gcaccagggg ctctctagac tgcccctcct ccatcgcctt ccctgcctct ccaggacaga
241 gcagccacgt ctgcacacct cgccctcttt acactcagtt ttcagagcac gtttctccta
301 tttcctgcgg gttgcagcgc ctacttgaac ttactcagac cacctacttc tctagcagca
361 ctgggcgtcc ctttcagcaa gacgatggct gtgctcaggc agctggcgct cctcctctgg
421 aagaactaca ccctgcagaa gcggaaggtc ctggtgacgg tcctggaact cttcctgcca
481 ttgctgtttt ctgggatcct catctggctc cgcttgaaga ttcagtcgga aaatgtgccc
541 aacgccacca tctacccggg ccagtccatc caggagctgc ctctgttctt caccttccct
601 ccgccaggag acacctggga gcttgcctac atcccttctc acagtgacgc tgccaagacc
661 gtcactgaga cagtgcgcag ggcacttgtg atcaacatgc gagtgcgcgg ctttccctcc
721 gagaaggact ttgaggacta cattaggtac gacaactgct cgtccagcgt gctggccgcc
781 gtggtcttcg agcacccctt caaccacagc aaggagcccc tgccgctggc ggtgaaatat
841 cacctacggt tcagttacac acggagaaat tacatgtgga cccaaacagg ctcctttttc
901 ctgaaagaga cagaaggctg gcacactact tcccttttcc cgcttttccc aaacccagga
961 ccaagggaac ctacatcccc tgatggcgga gaacctggtg agaagctcgg ttagggttcg
1021 tgttaccagc ccgggctgtt gactagtgac agtcatatgg gggcagcccc actttgcaaa
1081 agtatttctt gaagaaatac ttttcaggac atttggcttg gttccaagtc tttgctgttg
1141 tgaatagtgc cgcaataaac atacgtgtgc atgtgacaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaa
//