LOCUS BC062740 1000 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens tropomyosin 3, mRNA (cDNA clone MGC:72094 IMAGE:4271142), complete cds. ACCESSION BC062740 VERSION BC062740.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1000) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1000) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 51 Row: e Column: 24 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1000 /db_xref="H-InvDB:HIT000260631" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:72094 IMAGE:4271142" /tissue_type="Skeletal Muscle" /clone_lib="NIH_MGC_81" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1000 /gene="TPM3" /gene_synonym="hscp30" /gene_synonym="OK/SW-cl.5" /gene_synonym="TM-5" /gene_synonym="TM3" /gene_synonym="TM30" /gene_synonym="TM30nm" /gene_synonym="TPMsk3" /gene_synonym="TRK" /db_xref="GeneID:7170" /db_xref="HGNC:HGNC:12012" /db_xref="MIM:191030" CDS 331..807 /gene="TPM3" /gene_synonym="hscp30" /gene_synonym="OK/SW-cl.5" /gene_synonym="TM-5" /gene_synonym="TM3" /gene_synonym="TM30" /gene_synonym="TM30nm" /gene_synonym="TPMsk3" /gene_synonym="TRK" /codon_start=1 /product="TPM3 protein" /protein_id="AAH62740.1" /db_xref="GeneID:7170" /db_xref="HGNC:HGNC:12012" /db_xref="MIM:191030" /translation="MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLV IIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKIL TDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI" BASE COUNT 331 a 208 c 270 g 191 t ORIGIN 1 gggactcagg cagcagcccc ttctttcttg ccccagtctc cagttctcca gtgttcacag 61 gtgagcctac caacagccac tgctcatgat ggaggccatc aagaaaaaga tgcagatgct 121 gaagttagac aaggagaatg ctctggatcg ggcagagcaa gctgaagctg agcagaagca 181 ggcagaagaa agaagtaaac agctggagga tgagctggca gccatgcaga agaagctgaa 241 agggacagag gatgagctgg acaagtattc tgaagctttg aaggatgccc aggagaagct 301 gaaaaagctg ctgatgagag tgagagaggt atgaaggtta ttgaaaaccg ggccttaaaa 361 gatgaagaaa agatggaact ccaggaaatc caactcaaag aagctaagca cattgcagaa 421 gaggcagata ggaagtatga agaggtggct cgtaagttgg tgatcattga aggagacttg 481 gaacgcacag aggaacgagc tgagctggca gagtctaagt gttctgagct ggaggaggag 541 ctgaagaatg tcaccaacaa cctcaagtct cttgaggctc aggcggagaa gtactctcaa 601 aaagaagata aatatgagga agaaatcaag attcttactg ataaactcaa ggaggcagag 661 acccgtgctg agtttgctga gagatcggta gccaagctgg aaaagacaat tgatgacctg 721 gaagatgagc tctatgccca gaaactgaag tacaaggcca ttagcgagga gctggaccac 781 gccctcaatg acatgacctc tatataatta tcaccgtttc tgctctgttc tggatctgcc 841 ccctttactc ctcggggaac ccaaggcccc actctcgctc tggattccat ttgggtcagc 901 ctggctggtc cccaaggcat taggatgggg gagcaaaaag caacttatgt attttcttcc 961 acccccaccc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa //