LOCUS BC062622 1998 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens opsin 3, mRNA (cDNA clone IMAGE:5200803), complete
cds.
ACCESSION BC062622
VERSION BC062622.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1998)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1998)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657070
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1998
/db_xref="H-InvDB:HIT000260532"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5200803"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1998
/gene="OPN3"
/db_xref="GeneID:23596"
/db_xref="HGNC:HGNC:14007"
/db_xref="MIM:606695"
CDS 87..656
/gene="OPN3"
/codon_start=1
/product="opsin 3"
/protein_id="AAH62622.1"
/db_xref="GeneID:23596"
/db_xref="HGNC:HGNC:14007"
/db_xref="MIM:606695"
/translation="MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERL
ALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSC
LRNGWVWDTVGCVWDGFSGSLFGIVSIATLTVLAYERYIRVVHARVINFSWAWRAITY
IWLYSLAWAGAPLLGWNSFVVWKIFRQFK"
BASE COUNT 526 a 487 c 448 g 537 t
ORIGIN
1 gccccagccc cacccagtgc ggagcgcgcc gcgagccccg ccgcaagctg agcgcctccg
61 cccgccaggc gcgccggcgc cgggccatgt actcggggaa ccgcagcggc ggccacggct
121 actgggacgg cggcggggcc gcgggcgctg aggggccggc gccggcgggg acactgagcc
181 ccgcgcccct cttcagcccc ggcacctacg agcgcctggc gctgctgctg ggctccattg
241 ggctgctggg cgtcggcaac aacctgctgg tgctcgtcct ctactacaag ttccagcggc
301 tccgcactcc cactcacctc ctcctggtca acatcagcct cagcgacctg ctggtgtccc
361 tcttcggggt cacctttacc ttcgtgtcct gcctgaggaa cggctgggtg tgggacaccg
421 tgggctgcgt gtgggacggg tttagcggca gcctcttcgg gattgtttcc attgccaccc
481 taaccgtgct ggcctatgaa cgttacattc gcgtggtcca tgccagagtg atcaattttt
541 cctgggcctg gagggccatt acctacatct ggctctactc actggcgtgg gcaggagcac
601 ctctcctggg atggaacagc ttcgttgtgt ggaagatctt cagacaattc aagtgatcaa
661 gattttaaaa tatgaaaaga aactggccaa aatgtgcttt ttaatgatat tcaccttcct
721 ggtctgttgg atgccttata tcgtgatctg cttcttggtg gttaatggtc atggtcacct
781 ggtcactcca acaatatcta ttgtttcgta cctctttgct aaatcgaaca ctgtatacaa
841 tccagtgatt tatgtcttca tgatcagaaa gtttcgaaga tcccttttgc agcttctgtg
901 cctccgactg ctgaggtgcc agaggcctgc taaagaccta ccagcagctg gaagtgaaat
961 gcagatcaga cccattgtga tgtcacagaa agatggggac aggccaaaga aaaaagtgac
1021 tttcaactct tcttccatca tttttatcat caccagtgat gaatcactgt cagttgacga
1081 cagcgacaaa accaatgggt ccaaagttga tgtaatccaa gttcgtcctt tgtaggaatg
1141 aagaatggca acgaaagatg gggccttaaa ttggatgcca cttttggact ttcatcataa
1201 gaagtgtctg gaatacccgt tctatgtaat atcaacagaa ccttgtggtc cagcaggaaa
1261 tccgaattgc ccatatgctc ttgggcctca ggaagaggtt gaacaaaaac aaattctttt
1321 aattcaacgg gtgctttaca taatgaaaaa accacttgtg gcacacgatg ggcatctaac
1381 atcatcatct tctaatgtgt tggagatttt catttcaaat atatttttta aattactcta
1441 ttttccaaaa cacgtaatgc atttttctcg aaaatacctt actgtaaaaa taactgtcgc
1501 gtacacatgt gtgaagtagc tagaacatac tgaatttttt ttgtactgtt ggactctatt
1561 cagtgtcatg tcctatatct gatcaagtta tcaaggagat aattctagaa tgaaaaagaa
1621 aatcctcttg ttggaaacaa aagacgtttt atatgtgcag tatgacaaag aggagtttca
1681 gagacaactt tgaatccttg tcagcctgga gaccagcacc agaggaatct acaaggcaaa
1741 ctcccatata tttgcttccc ccaaattgct gcccctacag actcaaagct ctttttcttt
1801 gttttgttgt ttctctaaaa atttactgtt ctttgtcgat gctatataag ccagggagtt
1861 ctaagacgcc agctctttga gatttgctca ttcccctgta tttcccacat atatattaca
1921 tatacccgct aataaattta tgtttgtttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaa
//