LOCUS BC062341 4083 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens slingshot homolog 1 (Drosophila), mRNA (cDNA clone MGC:71173 IMAGE:6376684), complete cds. ACCESSION BC062341 VERSION BC062341.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4083) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4083) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 50 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254883. FEATURES Location/Qualifiers source 1..4083 /db_xref="H-InvDB:HIT000260341" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71173 IMAGE:6376684" /tissue_type="Eye, normal, pigmented retinal epithelium" /clone_lib="NIH_MGC_43" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..4083 /gene="SSH1" /gene_synonym="KIAA1298" /gene_synonym="SSH-1" /db_xref="GeneID:54434" /db_xref="HGNC:HGNC:30579" /db_xref="MIM:606778" CDS 80..3229 /gene="SSH1" /gene_synonym="KIAA1298" /gene_synonym="SSH-1" /codon_start=1 /product="slingshot homolog 1 (Drosophila)" /protein_id="AAH62341.1" /db_xref="GeneID:54434" /db_xref="HGNC:HGNC:30579" /db_xref="MIM:606778" /translation="MVLVTLQRSPTPSAASSSASNSELEAGSEEDRKLNLSLSESFFM VKGAALFLQQGSSPQGQRSLQHPHKHAGDLPQHLQVMINLLRCEDRIKLAVRLESAWA DRVRYMVVVYSSGRQDTEENILLGVDFSSKESKSCTIGMVLRLWSDTKIHLDGDGGFS VSTAGRMHIFKPVSVQAMWSALQVLHKACEVARRHNYFPGGVALIWATYYESCISSEQ SCINEWNAMQDLESTRPDSPALFVDKPTEGERTERLIKAKLRSIMMSQDLENVTSKEI RNELEKQMNCNLKELKEFIDNEMLLILGQMDKPSLIFDHLYLGSEWNASNLEELQGSG VDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVH CKMGVSRSASTVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDAS KQRHNKLWRQQTDSSLQQPVDDPAGPGDFLPETPDGTPESQLPFLDDAAQPGLGPPLP CCFRRLSDPLLPSPEDETGSLVHLEDPEREALLEEAAPPAEVHRPARQPQQGSGLCEK DVKKKLEFGSPKGRSGSLLQVEETEREEGLGAGRWGQLPTQLDQNLLNSENLNNNSKR SCPNGMEDDAIFGILNKVKPSYKSCADCMYPTASGAPEASRERCEDPNAPAICTQPAF LPHITSSPVAHLASRSRVPEKPASGPTEPPPFLPPAGSRRADTSGPGAGAALEPPASL LEPSRETPKVLPKSLLLKNSHCDKNPPSTEVVIKEESSPKKDMKPAKDLRLLFSNESE KPTTNSYLMQHQESIIQLQKAGLVRKHTKELERLKSVPADPAPPSRDGPASRLEASIP EESQDPAALHELGPLVMPSQAGSDEKSEAAPASLEGGSLKSPPPFFYRLDHTSSFSKD FLKTICYTPTSSSMSSNLTRSSSSDSIHSVRGKPGLVKQRTQEIETRLRLAGLTVSSP LKRSHSLAKLGSLTFSTEDLSSEADPSTVADSQDTTLSESSFLHEPQGTPRDPAATSK PSGKPAPENLKSPSWMSKS" BASE COUNT 1032 a 1161 c 1082 g 808 t ORIGIN 1 ccgggcccgg cccgggcggc ggtggcggtg gcggctctag ctcgagacgt ctgtggcgcc 61 ctcgcaccgc gccgcagcca tggtcctggt gaccctgcag cgctcgccca cgcccagcgc 121 cgcctcctcc tcggccagca acagcgagtt ggaggctggc agcgaagaag atcgaaaatt 181 aaacctcagc ttaagtgaga gctttttcat ggtgaaaggc gcagccctct tcttacaaca 241 gggaagcagc cctcaaggcc agcggagtct tcagcacccc cacaagcatg caggtgatct 301 gcctcaacat cttcaggtga tgatcaacct tctgcgttgc gaagacagaa tcaagctggc 361 agtgcgcctg gagagcgcct gggcggaccg ggtccggtac atggtggtgg tgtacagcag 421 cgggcgccag gacaccgagg agaatatctt gctgggagtg gacttttcca gtaaggaaag 481 taaaagctgc accattggga tggttctccg actgtggagc gacacgaaaa tccaccttga 541 tggagatggt gggttcagcg tgagcacagc aggaaggatg cacatattta agcctgtgtc 601 tgtccaggcc atgtggtctg ccctgcaggt gcttcacaag gcctgcgaag tggcccggag 661 gcacaactac ttccccgggg gtgtagctct catctgggct acctactatg agagctgcat 721 cagctccgag cagagctgca tcaacgagtg gaacgccatg caggacctgg agtctacgcg 781 gcccgactcc cccgcgctat ttgtggacaa gcccactgaa ggggaaagga ccgagcgcct 841 catcaaagcc aagctccgaa gcatcatgat gagccaggat ctagaaaatg tgacttccaa 901 agagattcgt aatgaattag agaaacagat gaattgtaac ttgaaggaac tcaaggaatt 961 tatagacaat gagatgctac ttatcttggg acagatggac aagccctccc ttatcttcga 1021 tcatctttat ctcggctctg aatggaatgc atccaatctg gaggaactgc agggctcagg 1081 ggttgattac attttaaatg ttaccagaga aatcgataat ttttttcctg gcttatttgc 1141 atatcataac atccgagtct acgatgaaga gaccacagac ctcctcgccc actggaatga 1201 agcgtatcat tttataaaca aagcgaagag gaaccattcc aagtgcctgg tgcattgcaa 1261 aatgggcgtg agtcgctcgg cctccacagt catagcctat gcaatgaagg aattcggctg 1321 gcctctggaa aaagcatata actatgtaaa gcagaagcgc agcatcacgc gccccaacgc 1381 gggctttatg aggcagctgt ctgagtatga aggcatcttg gatgcaagca aacagcggca 1441 caacaagctg tggcgtcagc agacagacag cagcctccag cagcctgtgg atgaccctgc 1501 aggacctggc gacttcttgc cagagacccc agatggcacc ccggaaagcc agctgccctt 1561 cttggatgat gccgcccagc ccggcttagg gccccccctc ccctgctgtt tccggcgact 1621 ctcagacccc cttctgcctt cccctgagga tgaaactggc agcttggtcc acctggagga 1681 tccggagagg gaggctctgt tggaggaagc tgctccacct gcagaggtgc acaggccggc 1741 cagacagccc cagcaaggtt ccggactctg tgagaaggat gtgaagaaga aactagagtt 1801 tgggagtccc aaaggtcgga gcggctcctt gctgcaggtg gaggagacgg aaagggagga 1861 gggcctggga gcagggaggt gggggcagct tccaacccag ctcgatcaaa acctgctcaa 1921 ctcggagaac ctaaacaaca acagcaagag gagctgtccc aacggcatgg aggatgatgc 1981 tatatttggg atccttaaca aagtgaagcc ttcctataaa tcctgtgccg actgcatgta 2041 ccctacagcc agcggggctc ctgaggcctc cagggagcga tgtgaggacc ccaatgctcc 2101 cgccatctgc acccagccag ccttcctacc ccacatcacg tcctcccctg tggcccactt 2161 ggccagcagg tcccgtgttc cggagaagcc agcctctggc ccaaccgaac ctcccccgtt 2221 cctaccacca gcaggctcca ggagggcaga caccagtggc cctggggctg gagctgccct 2281 agagccacca gccagccttt tggaaccttc cagagagacc ccaaaagtcc tgccaaagtc 2341 cctccttttg aagaattctc actgtgataa gaaccctccc agcacagaag tggtaataaa 2401 ggaagaatcg tcacccaaga aagatatgaa gccagccaag gacctgaggc ttctgttcag 2461 taatgaatct gagaagccga caaccaacag ctacctgatg cagcaccagg agtccatcat 2521 tcagctgcag aaggcaggct tggtccgcaa gcacaccaaa gagctagagc ggctgaagag 2581 cgtgcctgca gacccagcac ctccctccag ggatggccct gccagcaggc tggaggccag 2641 catccccgag gagagccagg atccagccgc gctccacgag ctgggccccc tggttatgcc 2701 cagccaggcc gggagtgatg agaagtcaga ggccgccccc gcttcattgg aaggaggctc 2761 actgaagagc ccccctcctt tcttctaccg cctggaccac accagtagtt tctcaaaaga 2821 ctttctgaag accatctgct acacccccac ctcctcttcc atgagctcca acctgacccg 2881 gagttccagc agcgatagca tccacagtgt ccgtgggaag cccgggctgg tgaagcagcg 2941 gacgcaggag attgagaccc ggctccggct ggcgggcctc accgtctctt ccccactgaa 3001 gcgctcacac tctcttgcca agctggggag tctcaccttc tcaacggaag acctgtccag 3061 tgaggctgac ccgtccaccg tcgctgactc ccaggacacc actttgagtg aatcttcctt 3121 cttgcatgag ccccagggaa ccccgaggga cccagctgca acctccaaac catcagggaa 3181 acccgcccca gaaaacttaa agagcccttc gtggatgagc aaaagctgac ccgccttttg 3241 ctgcgtcagg ctgggcggat attttcatat gatccctccc tcactttcac tgtggatttg 3301 gatcgacccc ttacatcttg atttccctta aacgagtgaa gtcatcctaa cttttcccct 3361 actcttgcca tagagaggag gagaagaaac taaccaacat gcagcacaag aaggggagct 3421 gtcagtcgtg tggcctggga gaaccaggag ccgccggcca ggagacacaa aactccgctc 3481 ccaccgtgtc ttcaagaaga accatgtttt aggaagaacg tgcacacata ggcgcacaca 3541 tccagactgt tcccttcgca tcctgcagaa gagtcctggt ggtggcagcc tcaccgcggc 3601 acacgttcta gctcattctt ggcctcgcag aaaactctcg gatggcaaca ttaagtccta 3661 cctctgttct cgctgcgctt tttattttta aaacacacga atgaccaagg cttgttccag 3721 ggaataatgc tctgtctgaa agcgtttttc caaaaaaaga atttttcgtt ttgtgttttg 3781 gttgggaccc cagacgtgtc aagactttta acccgacagc cccaagcact gctgagtaaa 3841 gtcatcagat gagtagtccc acgctgttgt tgagctgact ctgtgcccga atggtggtgc 3901 aggcgccctg tcctggttgt gttgttacgt gtttgaccag cacaggggtc cggtggggaa 3961 aatgtatggg ttgttctcag ttgttgctaa tgctgaagtt taaatctcaa ggggaagggc 4021 ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4081 aaa //