LOCUS BC061914 1046 bp mRNA linear HUM 17-SEP-2007
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3G, mRNA (cDNA clone IMAGE:3905631), complete cds.
ACCESSION BC061914
VERSION BC061914.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1046)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1046)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13399303
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1046
/db_xref="H-InvDB:HIT000260266"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3905631"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1046
/gene="APOBEC3G"
/gene_synonym="ARP9"
/gene_synonym="bK150C2.7"
/gene_synonym="CEM15"
/gene_synonym="dJ494G10.1"
/gene_synonym="MDS019"
/db_xref="GeneID:60489"
/db_xref="HGNC:HGNC:17357"
/db_xref="MIM:607113"
CDS 242..481
/gene="APOBEC3G"
/gene_synonym="ARP9"
/gene_synonym="bK150C2.7"
/gene_synonym="CEM15"
/gene_synonym="dJ494G10.1"
/gene_synonym="MDS019"
/codon_start=1
/product="APOBEC3G protein"
/protein_id="AAH61914.1"
/db_xref="GeneID:60489"
/db_xref="HGNC:HGNC:17357"
/db_xref="MIM:607113"
/translation="MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGP
SRPPLDAKIFRGQVPPGLQSLCRQELSQLGKQTTH"
BASE COUNT 265 a 269 c 258 g 254 t
ORIGIN
1 agaggtccct ctgccagggg gagggcccca gagaaaacca gaaagagggt gagagactga
61 ggaagataaa gcgtcccagg gcctcctaca ccagcgcctg agcaggaagc gggaggggcc
121 atgactacga ggccctggga ggtcacttta gggagggctg tcctaaaacc agaagcttgg
181 agcagaaagt gaaaccctgg tgctccagac aaagatctta gtcgggacta gccggccaag
241 gatgaagcct cacttcagaa acacagtgga gcgaatgtat cgagacacat tctcctacaa
301 cttttataat agacccatcc tttctcgtcg gaataccgtc tggctgtgct acgaagtgaa
361 aacaaagggt ccctcaaggc cccctttgga cgcaaagatc tttcgaggcc aggtaccacc
421 cggactccaa tcactttgca ggcaggagct aagccagctg ggaaagcaaa ccacgcactg
481 ataagtgaag tgcccggcgg cgggctatcc agtgtgtcct tctctcccac actttccaag
541 tccgtggccc tgaccttcct gctggaccgt cctgggatcg gatcgtggag ggggtttgcc
601 tctgcacaaa aggccttgtg tttccgtttt tcttttcttt tcttttttct tttttttttt
661 tgagacagag tttcactctt gttgctcagg ctggagtgca atgacgcgat ctcggctcgc
721 agcaacctct gcctcctggg ttcaagcgat gctgtcgcct cagactcgca agtggctgcg
781 attacaggtg cccaccacca cgcccagctg attttttttt tgtattttta gtacagatgg
841 ggtttcacca tattcaccag gctggtctcg aacttctgac ctcaggtgat ccacctgcct
901 cggcctccca aagtgttggg attacaggtg tgagccacag cgccggccta attttaatat
961 ttaattaatc caatgtggct aacatattac ttcaacatta attaacataa aattcttgac
1021 aagataaaaa aaaaaaaaaa aaaaaa
//