LOCUS BC061563 2549 bp mRNA linear ROD 23-JUN-2008
DEFINITION Rattus norvegicus POU class 1 homeobox 1, mRNA (cDNA clone
MGC:72907 IMAGE:6918965), complete cds.
ACCESSION BC061563
VERSION BC061563.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 2549)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2549)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: John C. Marshall, M.D., Ph.D
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 52 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254791.
FEATURES Location/Qualifiers
source 1..2549
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:72907 IMAGE:6918965"
/tissue_type="Pituitary gland, anterior, rat"
/clone_lib="NICHD_Rr_Pit1"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2549
/gene="Pou1f1"
/gene_synonym="GHF1"
/gene_synonym="GHF1A"
/gene_synonym="Pit1"
/gene_synonym="PIT1Z"
/db_xref="GeneID:25517"
/db_xref="RATMAP:41402"
/db_xref="RGD:3367"
CDS 121..996
/gene="Pou1f1"
/gene_synonym="GHF1"
/gene_synonym="GHF1A"
/gene_synonym="Pit1"
/gene_synonym="PIT1Z"
/codon_start=1
/product="POU class 1 homeobox 1"
/protein_id="AAH61563.1"
/db_xref="GeneID:25517"
/db_xref="RATMAP:41402"
/db_xref="RGD:3367"
/translation="MSCQPFTSADTFIPLNSDASAALPLRMHHNAAEGLPASNHATNV
MSTATGLHYSVPSCHYGNQPSTYGVMAGTLTPCLYKFPDHTLSHGFPPLHQPLLAEDP
TASEFKQELRRKSKLVEEPIDMDSPEIRELEQFANEFKVRRIKLGYTQTNVGEALAAV
HGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKVGANERKRKRR
TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSL
NQSLFSISKEHLECR"
BASE COUNT 891 a 485 c 501 g 672 t
ORIGIN
1 ggggagagcc gccctgatgt atatatgcaa tagggagccg tgaatcggcc ctttgataca
61 gtaatataat aaaagcggac tggcaagcgg tgcgtcttag ttctctactc tcttgtggga
121 atgagttgcc aacctttcac ctcggctgat acctttatac ctctgaattc tgacgcttct
181 gctgccctgc ctctgagaat gcaccacaat gccgctgagg gtctcccagc ctccaaccac
241 gccaccaacg tgatgtccac agcgacagga cttcattatt ctgtgccttc ctgtcattat
301 ggaaaccagc catccaccta cggagtgatg gcaggcactt taaccccttg tctttacaag
361 tttccagacc acaccctgag tcatgggttt cctcccctgc accaacctct gctggcggag
421 gacccaacag cctctgaatt taagcaggaa ctcaggcgga aaagtaaatt ggtggaagag
481 ccaatagaca tggactcccc ggaaatccga gaactggagc agtttgccaa cgaatttaaa
541 gtgagaagaa ttaagttagg atacacccag acaaacgtgg gcgaagctct ggccgctgtc
601 cacggctccg aattcagtca aacaaccatc tgccgatttg aaaacttgca gctcagtttc
661 aaaaatgctt gcaaactgaa agcaatttta tccaagtggc tggaggaagc tgagcaggtc
721 ggagctttgt acaatgaaaa agtgggagca aacgaaagga agaggaaacg gaggacaact
781 atcagtatcg ccgctaagga tgctttggag agacactttg gagagcacag caaaccttct
841 tcgcaggaga tcatgcggat ggctgaagaa ttgaatctcg agaaagaagt agtaagagtg
901 tggttttgca accgaaggca gagagaaaaa cgggtgaaaa cgagtctcaa tcaaagtctg
961 ttctctattt caaaggagca tcttgagtgc agataagact tgcctgtggt agccatgtgt
1021 ggtagccttt ccattccttt ctgatttcaa gaaaaatcag aagttactta gcttcataaa
1081 ctagattaaa tcagcaaccc ctgcagtttt tgtttcactt tctttctttc ctttttagat
1141 ccaatgattt aaaacaagac gttttattta gttgttctca gaattcatag cattgccttt
1201 actcctaaat catcaccaag aatgctcaca atacctcttc caattctgcc tttataccta
1261 atacacagag aggtggggat aactgggaga gaggccatca tatatgcgaa tattttgagt
1321 ttaaaattac cttttgtaag tcaatttatt gttctttaaa ttttaatcag taaggacaaa
1381 tatttaccga ctattaacca gggatggctc aagttgataa tctattgact tggccagaga
1441 gatgtctcag tggttaagag catctgttgc tcttccagag gatgtgggtt ccatcaccta
1501 tacagctcac aactgtctgt cacactattt ccagaggaaa tccaaggagt ctcctgggtt
1561 ccattgacac ttggcctgaa aatggagcac agacatacat gtagacaaaa tactcataca
1621 tatacagtaa aaataataaa tctataaaca aaaagaaaat atattggttt atactcagta
1681 tgcccctagc actatgtttt gttttgtttt gttttgtttt ggagtaaggt ttgacaatcc
1741 agaggtgact agagacaact aagaatttta ttaattgcct tcagaaataa tcttcagtca
1801 gaatctattg atatctttga cattaacact taggacgcgt tttttgaaca atttgtagga
1861 gcatttaggc atgacatctg ggcgtattct tttatacaca ttagctttct gaggctctgc
1921 tacagaaaac atgtgagctg caagctaaac ttgctgacac aataatcctt cagttttggc
1981 tttgttttgt tttgtttggt agtgagttca atcctgagca caagtgaaat ttaaaaatga
2041 aaaatatggt ttagggatcc ctaacctata tcataaatct gtgtggaagc tgcactaggg
2101 cgaggctacg tggcttactt gctgttatgt ttccagtgac tgaaaaagca ctcgctccta
2161 gtaggtatgt atagaccatg ctaaaggaat gggcccaatg gtgaacaacc gctacaaata
2221 tgaagggtac caggcaacct gaaaaatcta acttgttttt gaagtctcat tgtagaaact
2281 cacctgaggt tccttaacaa agtgtcaatt ttggtctcac tggtcacatt ttgatttatt
2341 aataaaaatt ggaaatatgg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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