LOCUS BC060872 3575 bp mRNA linear HUM 19-JUN-2008
DEFINITION Homo sapiens family with sequence similarity 171, member B, mRNA
(cDNA clone MGC:71825 IMAGE:30347998), complete cds.
ACCESSION BC060872
VERSION BC060872.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3575)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3575)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: j Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255207.
FEATURES Location/Qualifiers
source 1..3575
/db_xref="H-InvDB:HIT000260174"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71825 IMAGE:30347998"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3575
/gene="FAM171B"
/db_xref="GeneID:165215"
/db_xref="HGNC:HGNC:29412"
CDS 113..2599
/gene="FAM171B"
/codon_start=1
/product="family with sequence similarity 171, member B"
/protein_id="AAH60872.1"
/db_xref="GeneID:165215"
/db_xref="HGNC:HGNC:29412"
/translation="MARLCRRVPCTLLLGLAVVLLKARLVPAAARAELSRSDLSLIQQ
QQQQQQQQQQQQQQKQLEEAEEERTEVPGATSTLTVPVSVFMLKVQVNDIISRQYLSQ
AVVEVFVNYTKTNSTVTKSNGAVLIKVPYKLGLSLTIIAYKDGYVLTPLPWKTRRMPI
YSSVTLSLFPQSQANIWLFEDTVLITGKLADAKSQPSVQFSKALIKLPDNHHISNVTG
YLTVLQQFLKVDNFLHTTGITLNKPGFENIELTPLAAICVKIYSGGKELKVNGSIQVS
LPLLRLNDISAGDRIPAWTFDMNTGAWINHGRGMVKEHNNHLIWTYDAPHLGYWIAAP
LPGTRGSGINEDSKDITAYHTVFLTAILGGTIVIVIGFFAVLLCYCRDKCGTPQKRER
NITKLEVLKRDQTTSTTHINHISTVKVALKAEDKSQLFNAKNSSYSPQKKEPSKAETE
ERVSMVKTRDDFKIYNEDVSFLSVNQNNYSRNPTQSLEPNVGSKQPKHINNNLSSSLG
DAQDEKRYLTGNEEAYGRSHIPEQLMHIYSQPIAILQTSDLFSTPEQLHTAKSATLPR
KGQLVYGQLMEPVNRENFTQTLPKMPIHSHAQPPDAREEDIILEGQQSLPSQASDWSR
YSSSLLESVSVPGTLNEAVVMTPFSSELQGISEQTLLELSKGKPSPHPRAWFVSLDGK
PVAQVRHSFIDLKKGKRTQSNDTSLDSGVDMNELHSSRKLEREKTFIKSMHQPKILYL
EDLDLSSSESGTTVCSPEDPALRHILDGGSGVIMEHPGEESPGRKSTVEDFEANTSPT
KRRGRPPLAKRDSKTNIWKKREERPLIPIN"
BASE COUNT 1142 a 766 c 739 g 928 t
ORIGIN
1 agattgcgcg agggggagcg agcgagcggg cgctgccagg agcccgcagc cctggcgccc
61 gccgccgccc ggagccccgc aatatgccgc cgcggccctc tggctctagg ccatggcgag
121 gctctgccgg cgtgtcccct gcaccctgct tctcggcctg gccgtggtgc tgctgaaagc
181 gcggctggtc cccgcggccg ccagagcgga actcagccgc tccgacctca gcctcatcca
241 acagcagcag cagcagcagc agcagcaaca acaacaacaa cagcaaaagc agctggagga
301 ggctgaggag gagaggacag aggtgcctgg ggcaacctcc accttgacgg ttccagtgtc
361 tgtatttatg ttgaaagtcc aggtgaatga catcatcagt cgtcagtacc tgagccaagc
421 agttgtagaa gtgtttgtaa actacacgaa gacaaattcc acagtaacta aaagcaatgg
481 agcagtgctg ataaaagtac cctacaaatt aggacttagt ttaactatta ttgcttacaa
541 agatggctac gtgttgaccc ctctgccttg gaaaaccaga agaatgccaa tatattcatc
601 agttacactt tcactgttcc cgcaaagcca agcaaatata tggctatttg aagacactgt
661 tttaattact ggaaaattag ctgatgccaa gtctcaacca agtgttcagt tttcaaaagc
721 cttaattaaa cttcctgaca accatcatat tagcaacgtt actggctatc ttacagttct
781 acaacagttt ttgaaagtgg acaattttct gcatacaact ggaattactc tcaataaacc
841 aggttttgaa aacattgaat tgactcctct tgctgcaata tgtgtgaaaa tatattctgg
901 aggaaaagaa ctaaaggtca atggctctat tcaagtttct cttcctcttc tacgtctgaa
961 tgatataagt gcaggggatc gcatacctgc ttggacattt gatatgaaca caggtgcttg
1021 gataaatcat ggtcggggaa tggtcaagga acataacaat catttaatct ggacatatga
1081 tgcaccacat ttggggtact ggatagcagc tccacttcca ggaactagag gttcaggtat
1141 aaatgaagat tccaaggaca taactgccta ccacacagtg tttcttacag ccatattagg
1201 aggaacaata gtcattgtca ttggattttt tgctgtacta ctttgttatt gcagggacaa
1261 gtgtggtact ccacagaaaa gagaaagaaa tatcactaaa cttgaggtcc tcaagagaga
1321 ccagacaact tcaacaacac acataaatca tatcagtaca gttaaagttg cattaaaagc
1381 tgaggacaag tcgcagttat tcaatgccaa aaactcctca tatagtcctc agaaaaagga
1441 accatcaaag gcagaaacag aagaaagagt ttccatggta aaaactcggg acgattttaa
1501 aatctacaat gaagatgttt catttctatc agtcaatcaa aataattact caagaaaccc
1561 aacacagtct ttggagccca atgtagggtc caaacaacct aaacatatta acaacaatct
1621 atcttcatct ctaggtgatg ctcaagatga aaagaggtat ctcacaggta atgaggaggc
1681 gtatgggcgt tcccatattc ctgaacagct tatgcatatt tacagccaac ccattgccat
1741 ccttcaaaca tctgaccttt tctccacacc ggaacaatta catactgcta agtcagctac
1801 tttgccaaga aagggacagt tagtctatgg ccaattgatg gaaccagtaa atcgagagaa
1861 ctttacgcag accttgccca aaatgccaat tcattcccat gcacagcccc cagatgccag
1921 ggaagaggat atcatacttg aaggtcaaca gagcctgcca tcccaggctt cagattggag
1981 ccgatactca agcagcttac tggaatccgt ctctgttcct ggaacactaa atgaggctgt
2041 tgtaatgact ccattttcat cggaacttca aggaatttca gaacagaccc tcctggagct
2101 gtccaaagga aagccctccc cgcatcccag agcctggttt gtgtctcttg atggaaagcc
2161 agttgcacaa gtgaggcact cctttataga cctgaaaaag ggcaagagaa cccagagcaa
2221 tgacaccagt ctggactctg gggtggacat gaatgagctt cactcaagta gaaagctcga
2281 gagggagaaa acattcatca aaagcatgca tcagcccaag atcctttact tagaagattt
2341 agacctaagc agcagtgaga gtggaaccac cgtctgttcc cctgaagacc cagctttaag
2401 gcacatccta gatggaggga gtggagtgat catggagcac cctggagaag agtcgccagg
2461 aaggaaaagc actgttgaag attttgaagc taatacatcc cccactaaaa gaaggggcag
2521 accaccacta gccaaaagag atagcaagac taacatctgg aagaagcgag aggaacgccc
2581 actgattccc ataaattaac tccaatgggg attgtgtgtc tgctgtctcg tgctgtttat
2641 tcttgcttct tgttgtaaat tgcagtacga acttaagaaa atgagactga gcaatctcat
2701 ggttcttgga catgtctcaa gcagagtaaa tggtaattca gtaatcagag agaaagatac
2761 caaggaatgc tttttctggc ctattcattt atttttgggt gatgaattta cagtatctaa
2821 gttttcaaaa tgtaaaatag cttcaagatg ttagttatct gaaaatgttg ctcagccagc
2881 cagtttggcc ttgactctct taagaataac agtgaaatat atactcctca agttgcctcc
2941 aaaaatgttg cctctaccat ggtgactacc ccatggaaca tttagaaaca aaactgactt
3001 caggcatcat attattttaa atgttactat tacgtcttct tctgcctata cttaaaaata
3061 acttgataaa tgacttggac tgatgttact ctggagttat cacaaagaaa atgttgtttg
3121 gtctttaaag agcatgtgta ttgtatcatc ccaaacgtaa atcctacatt tatataagat
3181 gggcaagaag ctacttggtc attagagagg gagacaccag ctctttggtt gtttttggat
3241 ataactttac aaaataagta agatgttaat ttagaaattt gagaaattaa tgctctaata
3301 ctgagttttt atttaaaaat tattttttct tcccctcaac aatgaagcaa gcttagctgt
3361 caagggaaac tttttacaaa tctgaaaaaa acaatctatg actttggttt aaggctcact
3421 gatactttta ggctaaattg gttttaatat atttcttcta ttctaaaaac ctgaactcag
3481 tcacttaaag gctatgaaat ttaaaaaaaa agtcgatgtg aaagtttctt ttgaacacta
3541 aaataaaata tgtgcagata aaaaaaaaaa aaaaa
//