LOCUS BC060863 4040 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens zinc finger protein 549, mRNA (cDNA clone MGC:71804
IMAGE:30340439), complete cds.
ACCESSION BC060863
VERSION BC060863.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4040)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4040)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..4040
/db_xref="H-InvDB:HIT000260165"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71804 IMAGE:30340439"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4040
/gene="ZNF549"
/gene_synonym="FLJ34917"
/db_xref="GeneID:256051"
CDS 154..2076
/gene="ZNF549"
/gene_synonym="FLJ34917"
/codon_start=1
/product="ZNF549 protein"
/protein_id="AAH60863.1"
/db_xref="GeneID:256051"
/translation="MAEAALVNTPQIPMVTEEFVKPSQGHVTFEDIAVYFSQEEWGLL
DEAQRCLYHDVMLENFSLMASVGCLHGIEAEEAPSEQTLSAQGVSQARTPKLGPSIPN
AHSCEMCILVMKDILYLSEHQGTLPWQKPYTSVASGKWFSFGSNLQQHQNQDSGEKHI
RKEESSALLLNSCKIPLSDNLFPCKDVEKDFPTILGLLQHQTTHSRQEYAHRSRETFQ
QRRYKCEQVFNEKVHVTEHQRVHTGEKAYKRREYGKSLNSKYLFVEHQRTHNAEKPYV
CNICGKSFLHKQTLVGHQQRIHTRERSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVC
NVCGKSFRHKQTFVGHQQRIHTGERPYVCMECGKSFIHSYDRIRHQRVHTGEGAYQCS
ECGKSFIYKQSLLDHHRIHTGERPYECKECGKAFIHKKRLLEHQRIHTGEKPYVCIIC
GKSFIRSSDYMRHQRIHTGERAYECSDCGKAFISKQTLLKHHKIHTRERPYECSECGK
GFYLEVKLLQHQRIHTREQLCECNECGKVFSHQKRLLEHQKVHTGEKPCECSECGKCF
RHRTSLIQHQKVHSGERPYNCTACEKAFIYKNKLVEHQRIHTGEKPYECGKCGKAFNK
RYSLVRHQKVHITEEP"
BASE COUNT 1170 a 856 c 940 g 1074 t
ORIGIN
1 aactggagcc ggaaaccggt ggaggtggtg tccgcccgca gaggagcttg cctggtctcg
61 gtctgagcgt cgcccagcga tttgccaccg cacgcacgcc ggatcccggg ctttaccgcc
121 cgcctttcca ggccccgccc cgcctaaagt cccatggccg aggcagcgct agtgaatacg
181 ccgcagattc ccatggtaac agaagagttt gtgaaaccat cacagggcca tgtgaccttt
241 gaggatattg ctgtgtactt ctcccaggag gagtggggcc tccttgatga agctcaaagg
301 tgcctgtatc atgatgtgat gctggagaac ttttcgctta tggcctcagt aggttgtttg
361 catggaatag aggctgagga ggccccttct gagcagactc tttctgcgca aggagtgtca
421 caggccagga ctccaaagct aggtccttcc atcccaaatg ctcattcttg tgagatgtgt
481 atcctggtca tgaaagacat tttgtacctc agtgagcatc aggggacact tccctggcag
541 aaaccttata cgtctgtggc cagtgggaaa tggttttcat ttggttctaa cctgcaacag
601 caccagaacc aggacagtgg agagaaacac atcagaaagg aggagagcag tgccttgctt
661 ctgaatagct gcaaaattcc tctgtcagac aatcttttcc catgcaaaga tgttgagaag
721 gattttccaa ccatcctggg ccttctccaa caccagacca cccacagcag acaagagtat
781 gcacatagaa gcagggagac ctttcaacaa agacgttaca aatgtgagca agttttcaat
841 gagaaagttc atgttactga gcatcagaga gtccacactg gagaaaaagc ttataagcgt
901 agggaatatg ggaaatcctt gaactctaaa tacttatttg ttgaacacca gagaacccat
961 aatgcagaaa agccttatgt gtgcaatata tgtgggaaat cattcctcca taaacaaaca
1021 ctcgttgggc accagcagag aattcacact agagaaaggt cttatgtgtg catcgaatgt
1081 gggaaatcct tgagctccaa atactcactt gtggaacacc agagaaccca taatggagaa
1141 aagccttatg tgtgcaatgt atgtgggaaa tcattccgcc acaaacaaac atttgttggc
1201 catcagcaga gaatccacac tggagagagg ccttatgtgt gtatggaatg tgggaaatct
1261 tttattcatt cctatgaccg cattcgacac cagagagttc acactggaga aggggcttat
1321 cagtgcagtg aatgtgggaa atccttcata tacaaacagt cacttcttga tcaccataga
1381 atccacacgg gagaaaggcc ttatgagtgc aaagaatgtg ggaaggcctt cattcacaaa
1441 aaaagacttc ttgagcacca gagaattcat actggagaaa agccttatgt gtgcatcata
1501 tgtgggaaat catttatccg ctcgtctgac tacatgcgac accagagaat tcacactgga
1561 gaaagggctt atgaatgcag tgactgtggg aaagccttca tctccaaaca aacacttctt
1621 aagcatcaca aaatccacac tagagaaagg ccttatgaat gcagtgaatg tggaaaaggc
1681 ttctaccttg aggttaaact tcttcagcac caaagaatcc atactagaga acaactttgt
1741 gagtgcaatg aatgtggaaa agtcttcagc caccaaaaaa gacttcttga gcaccagaaa
1801 gttcacactg gcgaaaagcc ctgtgagtgc agtgaatgtg ggaaatgctt tagacaccgc
1861 accagcctca ttcaacacca gaaagttcac agtggagaga ggccttataa ctgcactgca
1921 tgtgagaagg cctttatcta taaaaacaaa cttgttgagc atcagcgaat ccacaccgga
1981 gaaaagccgt atgaatgtgg taaatgtggg aaagccttca acaaaagata ttcccttgtc
2041 aggcaccaga aggtacatat aacagaagag ccctagcaat tgttgggatg tgtaattgtc
2101 ttattcactg taggacacca gagagctgat ttttcaaggg atccaacaga cagaaattca
2161 ccctcataca tctgcatatc actagttgaa agattcacta caaggtccaa gtacttggga
2221 agctttctag agattacttg tactttctaa tctgcccagt gttacaacag acactaccat
2281 gtggcatatc ctcaccgttt tcatcagtca ctcacatgtg ctcaaggaat gcagaccact
2341 gtgcttacca aattctgaag ggaataatat aataaaagcc tgttgagggt cctcttccat
2401 cttgctgaac tgttcgaggc aaagacaaaa cccaactttg accaagaaga gcaatctgga
2461 ttcttgtagc ccatggaggt ttaccttctt cataggtttt tttttttttt atgtgattgc
2521 catagtggga tattccctct cccacattac ccaagaggga aatgggctgt cttaccatgt
2581 gctgatgtat gtgctctgcc agtgtgaagg gtgaacagct ccaactttat gtccccccag
2641 ggacatagta tgagatcgga aaatagttct tagtcctgtt tgtcttaatt tttattggtt
2701 tccaaggtct cctaggaagg agagcagagc tgtgtggtcc taatcatggt gtcgatgcca
2761 gatttatttg taggtccaga ggtctccctg agaagaggca tttgtgacaa actcaagtgc
2821 tgggacctgc atgaattgtt tatttgcagt gatgcttcat atttcccagc actgttcatg
2881 gtatcttatt tcccaggtcc ttcattgtag ccatgggcac tgaaggactg aattggtagg
2941 taggtcactg gttgtaagac ctactggggc caggtaagaa cagtaattgg cccagacagg
3001 taggtgtgat aaacagagta gaaaagattg tggccaagaa gagtgaatgt gtcccatcca
3061 aaggtgcatc cagatatgtc tgtgttacta tggcttcatg gtttgggggt atatagaaat
3121 tctcaggacc tcagaccttt gattctcctt tagcaacaca catcgtcagc ataaggcatc
3181 taaagatttt gtggactcat aacttatgta ctgtttttga gatgattgct gcacgggcag
3241 gaaagcagga tttgagagaa catacacctt gccttccaga tatgtggttt ttgtgattca
3301 cccagatctg ttgtgccagt taggaattat ctttattact tcccgtttat tgccactgct
3361 gagaaggctg tccttcctaa cttgtgagga gatgaatcct taataataag taaatcttgt
3421 gttatcctat agtctggttt tccaaaagga gaggtagatg catatttttg tgtggaacca
3481 tttatcttaa aacattgagg tgcagttttc atacacaaaa ccttctatct ttttaagaac
3541 tgtctgtatg gtttattgcc cagttaatgg gttttgatag tcatgttatc tcagtaagtg
3601 tcttgtctta gaaatatgtg tgtataggct gggtgcggtg gctcatgcct gtaatcccag
3661 cactttggga ggccaaggca ggtggatcac ctgaggtcag gagtttgaga ccagcctgac
3721 caacatggtg aaatccagtc tctacttaaa atacaaaaat tagccaggcg tggtggcgtg
3781 catttgtaat cccagctaca caggaggctg aggcaggaga attgcttgaa cctggggggc
3841 ggaggttgca atgagccaag gtcgcgccat tgcactccag cctgggcgac agagtgacac
3901 ttctcaaaaa acaaaaacaa aaacaaaaag aacagataag aaatacgtgt gtatatattc
3961 tattttgtgt gttttcattc accttatttc attcagtctt ccaaatgaaa tgttcttaat
4021 tttgaaaaaa aaaaaaaaaa
//