LOCUS BC060841 3300 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens integrator complex subunit 5, mRNA (cDNA clone
MGC:71747 IMAGE:30338563), complete cds.
ACCESSION BC060841
VERSION BC060841.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3300)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3300)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44771200.
FEATURES Location/Qualifiers
source 1..3300
/db_xref="H-InvDB:HIT000260143"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71747 IMAGE:30338563"
/tissue_type="Placenta, pre-eclamptic"
/clone_lib="NIH_MGC_148"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3300
/gene="INTS5"
/gene_synonym="INT5"
/db_xref="GeneID:80789"
/db_xref="HGNC:HGNC:29352"
CDS 54..3113
/gene="INTS5"
/gene_synonym="INT5"
/codon_start=1
/product="integrator complex subunit 5"
/protein_id="AAH60841.1"
/db_xref="GeneID:80789"
/db_xref="HGNC:HGNC:29352"
/translation="MSALCDPPGAPGPPGPAPATHGPAPLSAQELSQEIKAFLTGVDP
ILGHQLSAREHARCGLLLLRSLPPARAAVLDHLRGVFDESVRAHLAALDETPVAGPPH
LRPPPPSHVPAGGPGLEDVVQEVQQVLSEFIRANPKAWAPVISAWSIDLMGQLSSTYS
GQHQRVPHATGALNELLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVDALLDTSVQ
HSPHFDWVVAHIGSSFPGTIISRVLSCGLKDFCVHGGAGGGAGSSGGSSSQTPSTDPF
PGSPAIPAEKRVPKIASVVGILGHLASRHGDSIRRELLRMFHDSLAGGSGGRSGDPSL
QATVPFLLQLAVMSPALLGTVSGELVDCLKPPAVLSQLQQHLQGFPREELDNMLNLAV
HLVSQASGAGAYRLLQFLVDTAMPASVITTQGLAVPDTVREACDRLIQLLLLHLQKLV
HHRGGSPGEGVLGPPPPPRLVPFLDALKNHVGELCGETLRLERKRFLWQHQLLGLLSV
YTRPSCGPEALGHLLSRARSPEELSLATQLYAGLVVSLSGLLPLAFRSCLARVHAGTL
QPPFTARFLRNLALLVGWEQQGGEGPAALGAHFGESASAHLSDLAPLLLHPEEEVAEA
AASLLAICPFPSEALSPSQLLGLVRAGVHRFFASLRLHGPPGVASACQLLTRLSQTSP
AGLKAVLQLLVEGALHRGNTELFGGQVDGDNETLSVVSASLASASLLDTNRRHTAAVP
GPGGIWSVFHAGVIGRGLKPPKFVQSRNQQEVIYNTQSLLSLLVHCCSAPGGTECGEC
WGAPILSPEAAKAVAVTLVESVCPDAAGAELAWPPEEHARATVERDLRIGRRFREQPL
LFELLKLVAAAPPALCYCSVLLRGLLAALLGHWEASRHPDTTHSPWHLEASCTLVAVM
AEGSLLPPALGNMHEVFSQLAPFEVRLLLLSVWGFLREHGPLPQKFIFQSERGRFIRD
FSREGGGEGGPHLAVLHSVLHRNIDRLGLFSGRFQAPSPSTLLRQGT"
BASE COUNT 557 a 1012 c 951 g 780 t
ORIGIN
1 atgcgccgcc tgcgctccgc cgctcgcgcc tcgggctcgg ctcgggctcc gggatgtccg
61 cgctgtgcga ccctcccggg gccccagggc cacctgggcc tgccccggcc acccacggtc
121 ccgcgcctct cagtgctcag gagctgtccc aggaaatcaa ggcttttctg actggcgtag
181 accccattct gggccaccaa ctctcagccc gggaacatgc tcgctgtggt cttctcctgc
241 tccgttcttt gccacctgct cgggctgctg tgcttgacca cttgagaggt gtctttgatg
301 agagtgtccg ggcccacctg gctgccctgg atgaaacccc tgtggctggt ccacctcacc
361 tccgtccacc tccaccctct catgtccctg ctggtggacc tggtctagag gatgtggttc
421 aggaagtgca gcaggtgctg tctgagttta tccgggccaa cccaaaggcc tgggcacctg
481 tgattagtgc atggtccatt gacctcatgg ggcaactgag cagcacgtac tcaggccagc
541 accagcgtgt tccccacgct actggcgctc ttaatgaact gctacagctg tggatgggtt
601 gtagggccac gcgtacatta atggacatct atgtgcagtg cctctcggct ctcattggta
661 gctgcccaga tgcgtgtgtg gatgccttgc tggatacctc tgttcagcat tctccacact
721 ttgactgggt tgtggcacat attggctcct cttttcctgg caccatcatt tcccgggttc
781 tctcctgtgg ccttaaggac ttttgtgtcc atggtggggc tggaggtgga gctggcagta
841 gtggtggaag ctcttctcag accccctcta cagacccctt ccctggatct cctgccattc
901 ctgcggagaa acgggtgccc aagattgcct cagttgtagg catcctaggt cacctggcct
961 cccgccacgg agatagcatc cgacgggagc tcctgcgaat gttccatgat agcctggcag
1021 ggggatctgg aggccgcagt ggggacccct cccttcaggc cacggttccg ttcctactgc
1081 agctggcagt catgtcacca gctttgctgg gcactgtctc tggagagctt gtggattgcc
1141 tcaagccccc agctgtgctg agccagctgc agcaacacct tcaaggattc ccccgagagg
1201 agctggacaa catgttgaac ctggctgtgc acctggtgag ccaggcctct ggggcaggtg
1261 cctaccgctt gctgcagttc ctggtggaca cagctatgcc tgcttcggtc attaccaccc
1321 agggcctggc tgtgccagac accgtgcgtg aggcttgtga ccggctaatc cagctgctgc
1381 tgctgcacct gcaaaaactg gttcatcacc ggggagggtc tcctggggaa ggggtgctag
1441 gcccgccccc acctccccgc ttggtgccct ttttagatgc gctcaaaaac catgttggag
1501 agctgtgtgg agagacgtta cgattggaac ggaagcgctt cctctggcag caccagctct
1561 tgggcctgct gtctgtctat acccggccta gctgtggacc tgaggccttg ggccatctgc
1621 tgagccgagc ccgaagccct gaagagttga gtttggccac ccagttatat gcagggctag
1681 tggtcagcct ctctggcctc ctgcccctgg ctttccgaag ctgtctggct cgggtgcatg
1741 cagggacatt acagcctccc ttcacggccc ggttcctgcg caacttggca ctgctagtag
1801 ggtgggaaca gcagggtggc gagggccctg cagccctagg ggcgcacttt ggggaatctg
1861 cctcagccca tctgtctgac ctggctcctc tcctgctaca tcctgaggag gaagtagctg
1921 aagctgctgc ctctctcctg gccatttgtc cctttccttc tgaagcctta tccccctccc
1981 agctcctggg actggtaagg gctggggtgc accgcttctt tgcctctctg aggctgcatg
2041 gacccccagg tgtggcctca gcctgtcagc ttctcacccg cctgtctcag acatccccag
2101 ctgggctcaa ggctgtcctg cagctgctgg ttgaaggagc cttacatcga ggcaacacag
2161 aactgtttgg tgggcaagta gatggggaca atgagactct ctcagttgtt tcagcttctt
2221 tggcttctgc ctccctgttg gacactaacc ggaggcacac tgcagctgtg ccaggtcctg
2281 gagggatttg gtcagttttc catgctggag tcatcggccg tggcttaaag ccacccaagt
2341 ttgtccagtc acgaaatcag caggaagtga tctataacac ccagagcctc ctcagcctcc
2401 tggttcactg ctgcagtgcc ccagggggca ctgaatgtgg ggaatgctgg ggggcaccca
2461 tcttgagtcc agaggcagcc aaagcagtgg cagtgacctt ggtggagagt gtgtgtcccg
2521 atgcagctgg tgcagagctg gcctggcccc ccgaggaaca cgcccgggcc accgtggagc
2581 gggatctccg cattggccgg cgcttccgcg aacagcccct gctctttgag ctgttaaagc
2641 tggtagcagc tgcaccccca gccctgtgct actgttccgt gctgcttcgg gggctgctgg
2701 ccgccctctt gggccattgg gaagcctctc gccaccctga cacgacccac tccccctggc
2761 acctggaggc atcctgcacc ttagtggctg tcatggctga gggaagcctc ctgcctccgg
2821 ccctgggtaa tatgcatgaa gtatttagcc aactggcacc tttcgaggtg cgtctgctgc
2881 tgctcagtgt ctggggtttt ctccgggagc atgggccctt gcctcagaag ttcatcttcc
2941 aatcagagcg gggtcgcttc attcgggact tctccaggga gggtggaggt gagggtggac
3001 cccatctggc tgtgctgcac agtgtcctcc accgcaacat cgaccgccta ggtcttttct
3061 ctggccgttt ccaggcacct tcaccgtcca ctctccttcg acaggggacg tagccttttc
3121 ttgctctgga agcccaggga ggttgagcag tgagagaggg aagggactaa cgtgctccgg
3181 aagggtggag gtttctcttc taagtccttg gtctaaagag cgctgtcact tttttctctc
3241 ccactttttt ttttctaaat aaaatttgcc aacttgagaa aaccaaaaaa aaaaaaaaaa
//