LOCUS BC060840 3798 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens N-ethylmaleimide-sensitive factor attachment protein,
beta, mRNA (cDNA clone MGC:71740 IMAGE:5284972), complete cds.
ACCESSION BC060840
VERSION BC060840.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3798)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3798)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: n Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44917605.
FEATURES Location/Qualifiers
source 1..3798
/db_xref="H-InvDB:HIT000260142"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71740 IMAGE:5284972"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3798
/gene="NAPB"
/gene_synonym="SNAP-BETA"
/db_xref="GeneID:63908"
/db_xref="HGNC:HGNC:15751"
CDS 43..939
/gene="NAPB"
/gene_synonym="SNAP-BETA"
/codon_start=1
/product="N-ethylmaleimide-sensitive factor attachment
protein, beta"
/protein_id="AAH60840.1"
/db_xref="GeneID:63908"
/db_xref="HGNC:HGNC:15751"
/translation="MDNAGKEREAVQLMAEAEKRVKASHSFLRGLFGGNTRIEEACEM
YTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAGNAYKKADPQEAIN
CLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSADYYKGEESNSS
ANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDE
LNAKLALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWL
TTMLLRIKKSIQGDGEGDGDLK"
BASE COUNT 1038 a 661 c 896 g 1203 t
ORIGIN
1 agcgagccgg ctgagggggc tgtggcggcc gcggcgggcg acatggacaa cgcggggaag
61 gagcgtgagg cagtacagct gatggcggag gccgagaagc gagtcaaggc ctcccactcc
121 ttcctccgag ggctgtttgg aggaaacaca agaatagaag aggcttgtga aatgtatacc
181 agagctgcaa atatgttcaa gatggctaaa aattggagtg ctgcaggaaa cgcattttgt
241 caggcagcca agctccacat gcagcttcag agcaaacatg actctgctac cagctttgtg
301 gatgctggaa atgcttacaa aaaggcagat ccccaagagg ctatcaactg cttaaatgca
361 gccatcgaca tttacacaga catgggaagg tttacaattg cagccaagca ccacattact
421 attgcagaga tctatgagac tgaacttgta gacattgaga aggctattgc acattatgaa
481 caatctgctg attattacaa aggagaagaa tccaacagct cagcaaacaa gtgtctgctg
541 aaggtggcag catatgctgc ccagcttgag cagtaccaga aagccattga gatctatgag
601 caggttgggg caaacacaat ggataatcct ttgttgaaat acagtgcaaa ggattacttc
661 ttcaaagctg ccctctgcca cttcatagta gacgagttga atgccaagct tgctcttgag
721 aaatatgagg aaatgtttcc agcatttact gattcaagag aatgtaaatt attgaaaaaa
781 ctcctagaag ctcatgaaga acagaacagt gaagcttaca ctgaagcagt gaaggaattt
841 gactcaatat ctcgcttgga tcagtggctg accaccatgt tgcttcgcat caaaaagtcc
901 atccaagggg atggagaagg agatggagac ctaaaatgaa atgtttttgt ctttgtggca
961 tgcagctaac tcctctttag ttttgtctta gggtcaagtg atctttatgg gatgcctatt
1021 taatggctta attttgttgc atatgagcca gacggcctgt gtattgttta agctcgccaa
1081 gtctgtgttg ctgtgaaatg aatgaaggag aggctcctgt tcatcttgtg gtaatgatgg
1141 gttgtttcat gcttatcaga acccccagcg ttttctgaga agtacttcag aatctcatcc
1201 ctcatatttc attggtattt gtggagccta tgtttaatgt tgccacgtgt ttttatgtcc
1261 tttttgttgg acttgagtac tcagcccagt tgttctcata gatgctttgc attttctctg
1321 tgctttggca tctgaatatg ttctttaaat gtgtgtttag tttaggacag ttactaggaa
1381 tgagtttata acttcattag aaatcatttc tatttttgtt atcctgtgat tattttgatg
1441 gtgctagtga ctagtttctt tgctttttgt gttgttccgt atgctaacat gtgcatggca
1501 aaaatttaga atagccaggg tctgtaggca tcacattgtg aggaagggag ctttctggaa
1561 gtacttgctt catgtatgga tgagtgtcaa agtgaatttg atttgtactt agacacacgc
1621 gtgcacacac acacacatat cacaagatct gttagaaatg gaatttttct ctttttctgg
1681 agatagtttt cacttttagt tggagtggaa atccctttat atttacattg aagtatttta
1741 attggcatag cctgctcatt attttcatgt ttatacactt tcccacgttg aggtggtgtg
1801 ttctgtgctg tgactataga aatcttggtc agggctggat agattatcta agtcaagctt
1861 gagaatgaat gtatgtaatt ttcctgttta ttgtacatga tgggttaggt ggggtgaatg
1921 tggtacagga atgtcctgta tgcccaagtg ggcaagaacc ccaacttgtt tctcagggga
1981 cttgattgtt ctcttagctg gtggaatatg ttggcttatg tgtttgaact ctgtcgtgtt
2041 taattggttt atataatata tgtatgctat cttgattcat gaacttgatt ctattaattt
2101 atatgctgat attgtacttt agacatacgc ttgtctcctg aatgtcctct gaatatttta
2161 tagttaaatg atttatattt gaaatgtgtt gccagactta acccagcaga cactctgaca
2221 tcacggagct tcactgatga caggtaacga aacttcctat gttatgtcag gtagtagtaa
2281 gtagtattgg aatgatgttt tcatttttgg tggctctcaa ctggaattgg tagtgtttcc
2341 aggccaaggg tcgactgcag gttgtttgag aaatgatgag taggtcagtc taggaagaaa
2401 gagaaagtag caggaaagga agtgggaagg gccagccaag gacagactgt agaggatcca
2461 catcaggtgg ccacgaggac ttgcaggcta tagttatggt ggtgacatgc atgaggtggg
2521 ctggtagagc aggaagctct gtgatgtcag agcatctact gggactacag gtgcactgta
2581 gtccccacta ctgggggtgg caatgaagac actctgtctg ttgggcccta gaatttaatg
2641 tggatttcct ccttccttcc aagttctgag attcttaaat gagagctggc tgtcttctag
2701 aggtaagacc tggaatggag tccagttggt actttttcac tccctcttag aatctcttat
2761 gaaaaaatga tcagagagaa aagtggggtt ttgtttcccc acctaatata tcctacaacc
2821 agccaaatgc acttttgtga aaatggggtg tgaggagtgg ttctgcagct tgagtcctct
2881 ggttttaagt agtttgtttc tacttgttta aagaatcttc tggtctgacc acttaaagta
2941 aaaactacat gatttatttt cgggcaatta tgtttagctt tcatcattat actccaacag
3001 acccgtctga aggggtattt tttttttaac aataatgttt gtaacatttt gttgtgtcaa
3061 ttagagggtc acttgtttgt attgcaataa acactgggac cagttccggg gttaagaatt
3121 aatttttgtt tttaatattt cacatgaaaa gaatcaaagt aattgtaatg gctagaagag
3181 acctgccaga agattaaaaa aaagaatgag agaaaagccc agttagtggt gtgcaaactt
3241 acttccttta aatgtcccat ggatgtagga cagtgccatg tttcaagatg cctgtgagct
3301 aggtcttcaa gatttataga atgttactta tgaacaaaat ataattattt atggtacaat
3361 tcttgtactt tagcaaatct ggagttagtt catagtcaaa gtcagttaat atttcttaga
3421 ggaaagtttt gctttttgtg gcaacatttt tatagcttgt gtgagttctt ttttatttaa
3481 tgatttgaaa gcatttttgc acagtcgtga ccgtgtgtgg tggcgtcact gtaaccaaag
3541 tatatgcacc agcccttgtg catttattgt ttctcctgat tttgtggatt taaatgtcca
3601 aatgcaaacc tttgtgactt cctttggagg acttggcagc acagcatgcc cccgtgacct
3661 gcctgctgtg gtatgagcta tgaccaagag caggcttcct gctccatgga gtcctgagtt
3721 gctctggggc aggggattac gttatgaaaa ctaaccatgt gtaacaataa atctacctta
3781 gcaaaaaaaa aaaaaaaa
//