LOCUS BC060827 4221 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens sphingosine-1-phosphate receptor 3, mRNA (cDNA clone MGC:71696 IMAGE:30342032), complete cds. ACCESSION BC060827 VERSION BC060827.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4221) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4221) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 133 Row: e Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38788192. FEATURES Location/Qualifiers source 1..4221 /db_xref="H-InvDB:HIT000260129" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71696 IMAGE:30342032" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4221 /gene="S1PR3" /gene_synonym="EDG-3" /gene_synonym="LPB3" /gene_synonym="S1P3" /db_xref="GeneID:1903" /db_xref="HGNC:HGNC:3167" /db_xref="MIM:601965" CDS 397..1533 /gene="S1PR3" /gene_synonym="EDG-3" /gene_synonym="LPB3" /gene_synonym="S1P3" /codon_start=1 /product="sphingosine-1-phosphate receptor 3" /protein_id="AAH60827.1" /db_xref="GeneID:1903" /db_xref="HGNC:HGNC:3167" /db_xref="MIM:601965" /translation="MATALPPRLQPVRGNETLREHYQYVGKLAGRLKEASEGSTLTTV LFLVICSFIVLENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKK TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGM CWLIAFTLGALPILGWNCLHNLPDCSTILPLYSKKYIAFCISIFTAILVTIVILYARI YFLVKSSSRKVANHNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRVQACPI LFKAQWFIVLAVLNSAMNPVIYTLASKEMRRAFFRLVCNCLVRGRGARASPIQPALDP SRSKSSSSNNSSHSPKVKEDLPHTAPSSCIMDKNAALQNGIFCN" BASE COUNT 1081 a 1089 c 995 g 1056 t ORIGIN 1 tagtctctga ctcgctcggg cagaggccga ggaagccggt tccggggacg ggcaacaggg 61 actcagggac cagaaggcgg ctgcaggacg cgaccgagca ggaccccagg cccgggaacg 121 acgtcgcgag cgctgagact gccgggcctc ccagcccatc tggcattcga gcgcaggacc 181 gggcgccccg gcaccgccgc gcgccacccg ctaggatgcc ggtggcccca gcgccctcag 241 ccgacggagg agcccttttt caacgccctc gctggagtct ggcctgcacg ccttgctgaa 301 tgaagccgga acctcagccc cgcttccctt tgaaatgaat gttcctgggg cgccctctcg 361 tggattttgg agctaatcgt ctgtgaatgc caagtgatgg caactgccct cccgccgcgt 421 ctccagccgg tgcgggggaa cgagaccctg cgggagcatt accagtacgt ggggaagttg 481 gcgggcaggc tgaaggaggc ctccgagggc agcacgctca ccaccgtgct cttcttggtc 541 atctgcagct tcatcgtctt ggagaacctg atggttttga ttgccatctg gaaaaacaat 601 aaatttcaca accgcatgta ctttttcatt ggcaacctgg ctctctgcga cctgctggcc 661 ggcatcgctt acaaggtcaa cattctgatg tctggcaaga agacgttcag cctgtctccc 721 acggtctggt tcctcaggga gggcagtatg ttcgtggccc ttggggcgtc cacctgcagc 781 ttactggcca tcgccatcga gcggcacttg acaatgatca aaatgaggcc ttacgacgcc 841 aacaagaggc accgcgtctt cctcctgatc gggatgtgct ggctcattgc cttcacgctg 901 ggcgccctgc ccattctggg ctggaactgc ctgcacaatc tccctgactg ctctaccatc 961 ctgcccctct actccaagaa gtacattgcc ttctgcatca gcatcttcac ggccatcctg 1021 gtgaccatcg tgatcctcta cgcacgcatc tacttcctgg tgaagtccag cagccgtaag 1081 gtggccaacc acaacaactc ggagcggtcc atggcactgc tgcggaccgt ggtgattgtg 1141 gtgagcgtgt tcatcgcctg ctggtcccca ctcttcatcc tcttcctcat tgatgtggcc 1201 tgcagggtgc aggcgtgccc catcctcttc aaggctcagt ggttcatcgt gttggctgtg 1261 ctcaactccg ccatgaaccc ggtcatctac acgctggcca gcaaggagat gcggcgggcc 1321 ttcttccgtc tggtctgcaa ctgcctggtc aggggacggg gggcccgcgc ctcacccatc 1381 cagcctgcgc tcgacccaag cagaagtaaa tcaagcagca gcaacaatag cagccactct 1441 ccgaaggtca aggaagacct gccccacaca gccccctcat cctgcatcat ggacaagaac 1501 gcagcacttc agaatgggat cttctgcaac tgatcgtctc catgcgccct gctctgcggc 1561 tgtgttctta tttattgcat gcgtcgcttc cacaggggcc cctcaagagc tgtgactcgg 1621 gagagctacc ttactttgac caacagcctg cccagtgtgg atgtctctta cagagggggc 1681 ccaaggaatc accaccccgc ttcagtgtaa acaacgtgcc ttgtccactt tgggctccag 1741 agtctttcag atgtactaag ctgctgacat catccactgc cttctgctgc atcctagaca 1801 ccctccctgt tgttcacaga gagggaaggt cgtgggccac acaatgctgt gtgaccctct 1861 ccgtgtgcct ctgaatggtg ttttgatgat tttacactac atttcctgtg cgtagaatgg 1921 atgcttgtat attcgtacac ctctatgtta cacagaattt gtgttgcagg tgtttgccat 1981 gtggtaccta catagaatct ccatacaaca cacaggtaac aggttataca agtggattca 2041 gactgaaccc ccagtacaag gacattgttt tgaactaggt ggacatgcca tccctggtct 2101 ccttagactg acatgattct catgttaacc aagttttaaa agttcaaatt ccccaaaaag 2161 gcttgtccaa ggctggcccc agatgtgtgg gtctgaccca caccagccct gtgtcctgtc 2221 ctttcagtca tttgtccctg cgtaatttta atcgtattcc aaagcccaat tatgtgatgg 2281 ttttcaggtt tctgcaaatt acagaagagc cagccaagat cacccaggag cttgtgcccc 2341 cagatgggcc aaagaaagag cctatgaagg agaagcagaa gcagacggct ggcctggctc 2401 accttcccac gccagtgggg caggggtctg cttcaggaaa tggaagctgt ccaggaaatg 2461 agcagagatt cacaagacag cactttgatt ctatgttgag tttgtttcta tattagaaaa 2521 gcagcaagtc agtaatcccc cgtggcatca cagctaagta gctgtggcca ccggcagttt 2581 cacagcatcc tgaaagctgg cactgatcgt gactatcagt gaaagaagtt taattttcag 2641 gttagaaaat gtgatctggc agtttatgca ttcttcagag taatgtaata atacctatgt 2701 gatgctgtaa ttttactttt caacataagt tgaacccgta gcagtctgtt taccttgtaa 2761 agggattact tagaagacat ttttgtacat gctcttcccc aaggattgta cgtattatac 2821 aaatagatgg aaagaaaagt gaacacgttt gtagaacttt cataagcaca cagttgctgt 2881 gttgagttct ctttaaaaac aaggacaaaa ccaaccagcg ttcaaaggaa cctcccatca 2941 gagtccccta aagtatttta ggttcagtga gcatttgcct gaataaaacc taaaagagta 3001 gtcttaacac attactaact ttttctaaga gaaattgatt cctgttttgt catctgatgc 3061 aatttgctct tataaagaga cattttcata ggttcagagt aactcacctc catgggctga 3121 ccaaaggctt ttctaatttt tgttactgat gagatgaaac ctatttgtaa ggagatcttc 3181 cccaggagca tttctgttgc cttcttgaca tcaatgaaaa gtagcatatt ctcttatgaa 3241 atagcatgag aaaacacagg gcatttctag gacagtaaaa cgttaaagta ctggattaag 3301 aaaacaacaa caggctgggc gcagtggctc acacctgtaa tcccagcact ttgggaggct 3361 gaggcgggtg gatcacctga ggtcaggagt ttgtgaccag cctggccaac atagtgaaat 3421 cctgtttcta ctaaaaatac aaaaattagc tggatgcgat agcacgtgcc tgtagtccca 3481 gctactcggg aggctgaggc tggagagttg ctcaaacccg ggaggcggag attgcagtga 3541 gccaagatcg caccgctgca ctccagcctg ggtgacagag cgaccctctg tctcaaaaaa 3601 taataataat aataaataaa acaacaacaa aatgcatcag agagccaaaa cattcagtat 3661 tgcattttca cataggtgat gaaatgactt tggaacttta tctgtgttat agttatgagt 3721 tgctttggga gacttggagc tctctgtagc tattgttcat aacactttgc tccataaccc 3781 tgatgtccgc agtatctaag tatctcagcc ttcatccatt aactctacta gggagcccac 3841 agccaccatt tccactagga ggtatcaata tttgtggtat gacataaggc tcccttgaaa 3901 taacaagact tttgagcaat ctgaattaaa aatacatcaa aaaagtaata gcgctcattt 3961 gctaaatgca aaaaataatc acctttgata ccaatgtgca ccaatatgcc taactagcta 4021 gccagctgga gataatttac cagggaatgt ttcaaagccc taaccttgaa gtttggaaac 4081 aggtggtctt ctatgctgca gagaaactat gcattaggtc tcttttcaat tagaaacctt 4141 tactatttcc aatgtatgtt tgttaaaaat aataataata aaaccaaaag cctttgtgga 4201 aacccaaaaa aaaaaaaaaa a //