LOCUS BC060778 4031 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57, mRNA
(cDNA clone IMAGE:30338933), complete cds.
ACCESSION BC060778
VERSION BC060778.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4031)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4031)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: d Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39777585
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4031
/db_xref="H-InvDB:HIT000260080"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30338933"
/tissue_type="Placenta, pre-eclamptic"
/clone_lib="NIH_MGC_148"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4031
/gene="DHX57"
/gene_synonym="DDX57"
/gene_synonym="FLJ32861"
/db_xref="GeneID:90957"
CDS 100..2076
/gene="DHX57"
/gene_synonym="DDX57"
/gene_synonym="FLJ32861"
/codon_start=1
/product="DHX57 protein"
/protein_id="AAH60778.2"
/db_xref="GeneID:90957"
/translation="MSSSVRRKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGG
GGGGGNRKASSRIWDDGDDFCIFSESRRPSRPSNSNISKGESRPKWKPKAKVPLQTLH
MTSENQEKVKALLRDLQEQDADAGSERGLSGEEEDDEPDCCNDERYWPAGQEPSLVPD
LDPLEYAGLASVEPYVPEFTVSPFAVQKLSRYGFNTERCQAVLRMCDGDVGASLEHLL
TQCFSETFGERMKISEAVNQISLDECMEQRQEEAFALKSICGEKFIERIQNRVWTIGL
ELEYLTSRFRKSKPKESTKNVQENSLEICKFYLKGNCKFGSKCRFKHEVPPNQIVGRI
ERSVDDSHLNAIEDASFLYELEIRFSKDHKYPYQAPLVAFYSTNENLPLACRLHISEF
LYDKALTFAETSEPVVYSLITLLEEESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINN
PACHKTVIPNNSFVSNQIPEVEKASESEESDEDDGPAPVIVENESYVNLKKKISKRYD
WQAKSVHAENGKICKQFRMKQASRQFQSILQERQSLPAWEERETILNLLRKHQVVVIS
GMTGCGKTTQIPQFILDDSLSGPPEKVANIICTQPRRISAISVAERVAKERAERVGLT
VGYQIRLESVKVCMLCLFPGNRNLWFLGIKSFGG"
BASE COUNT 1279 a 780 c 922 g 1050 t
ORIGIN
1 gagaatcgtg agggtggcca agtccagttt ggacctctga cccttgggca gcacctcccg
61 acagccggct cgggacccaa ctctgcgagc caggtgaaaa tgagttcttc agtaagaaga
121 aaaggcaagc caggcaaagg aggtggaaaa gggtcttcta gaggaggaag aggaggcagg
181 agtcacgcca gtaaatctca tgggagtggt ggcggtggcg gtggtggtgg tggtggaggt
241 ggcggcaaca gaaaggcctc cagtagaata tgggatgatg gagatgactt ttgtatcttc
301 agtgaatcaa ggcgcccttc cagacctagc aacagtaaca taagcaaagg agagtcacgc
361 ccaaaatgga aacccaaagc caaagtaccc cttcagactc tacatatgac ttctgagaat
421 caagagaaag tgaaagctct tctccgagac ctgcaagaac aagatgctga tgctggatct
481 gaaagaggcc tttctgggga ggaggaagat gatgagcctg attgctgtaa cgatgagcgg
541 tactggccag ctggacagga accttccctc gttcccgact tggatccttt ggaatatgct
601 ggcttagcct cagtggagcc ttatgttcca gaatttacag tctccccatt tgcagtgcaa
661 aaactttcca ggtatggttt caatactgaa cgctgtcaag cggtcctgag gatgtgtgat
721 ggagatgtgg gagcatcact agagcatctc cttacccagt gtttttcaga gacatttgga
781 gagaggatga agatctctga ggcagtcaac cagataagct tggatgagtg tatggaacag
841 cgacaggaag aggcatttgc tctcaagtcc atctgtggag aaaaatttat agaaagaatt
901 cagaacagag tctggaccat tgggttagaa ctggagtatc tgacaagtag attccgcaaa
961 tccaagccaa aagaaagtac caaaaatgta caagagaatt cacttgaaat ctgtaaattt
1021 tacctcaaag gaaattgtaa atttggatca aaatgcagat tcaaacatga agtgccccca
1081 aatcaaattg ttggaagaat agaaagaagt gtagatgatt ctcatcttaa tgctattgaa
1141 gatgcatctt ttttatatga acttgaaatt cgattttcta aagaccacaa atatccctac
1201 caagctccgc tcgtggcatt ttattccacc aatgagaacc tacctctggc ttgtcgttta
1261 catatttctg agtttcttta tgacaaggcc ttgacatttg cggaaacttc ggaacctgtc
1321 gtatattctt tgataaccct tttagaggaa gagtcggaaa tagtcaagtt actaacgaat
1381 acccaccaca agtatagtga tcctcctgtg aactttctgc cagtaccctc taggaccaga
1441 ataaataatc ctgcctgtca taaaacagtg attccaaata attcttttgt ttctaatcaa
1501 attccagaag ttgaaaaagc atcagaatct gaggagtcag atgaggatga cggtcctgca
1561 cctgttatag tagagaatga aagctatgtg aaccttaaga aaaagatttc caaaagatat
1621 gactggcagg caaagtcagt acatgctgaa aatggtaaaa tctgcaagca gttccgaatg
1681 aaacaggctt ccagacagtt ccagtccatt ctgcaagaga ggcaatcact ccctgcttgg
1741 gaagaaagag aaaccattct taacttattg cgtaagcacc aggtggttgt cataagtggt
1801 atgactggat gtgggaaaac cacacaaatt ccgcagttta ttctggatga ttctctgagt
1861 ggaccacctg agaaggtagc caacatcatc tgtacccaac cccgacgaat ctctgcaatc
1921 tctgttgctg aacgcgttgc taaagaaaga gcagagaggg tgggtctgac cgtgggatac
1981 cagattcggt tagaaagtgt caaggtttgt atgctctgct tatttcctgg taacagaaat
2041 ttatggtttt taggtataaa aagttttggg ggttagggga ttcatgggca atttgggata
2101 tatactttca ggttattttt aaattaatga ttacctttgg taatcattta tttaaatatt
2161 tagaaatatt tagaaatatt ttggtataag aactcttatg gccaggcgcg gtggctcaca
2221 cctgtaatcc cagcactttg agaggccaag gcaggtggat cacctgaggt cgggagttcg
2281 agaccagcct gaccaacatg gagaaacccc atctctacta aaaatacaaa aattagccga
2341 gtgtggtggc acacgcctgt aatcccagct actcgggagt ctgaggcagg agaatccctt
2401 gaacctggga gacggaagtt gcaatgagcc gagattgcgc cattgcactc cagcctgggc
2461 aaaaagagga aaattctgtc tcaaaaaaaa aaaaaaaaca aaaaactctt atttggttgt
2521 actaaatttc ctctgtaaag ctttttattt tttattggca gaagtcatct agtaaagact
2581 gttttgctct tgaacttggg acataatcca tttaaccaaa taaggagcag acagattgag
2641 aactgttttc attattcact gttttttaat gctttttatg aaaatcttaa cattgtgata
2701 tgaagtagaa aggcttttat tactgtccct ggcaagaaac tatgtttagt atggtttcct
2761 attaaatgga actgctggtg tttccaatat tttttatcac tatccattca aaatggcttt
2821 ccagtaatgt ttcctttttt tgaaaatttt attaatgatt tatattgccc tttcatgtgt
2881 aagtcctcag ccaccagact gttatactgc accacgggag tgctgctgag aaggctagaa
2941 ggagatacag ctctacaagg agtttcccat atcattgttg atgaagttca tgagaggaca
3001 gaagaaaggt aaaacaaaga ctttcccagg gaacacacac tcacctgaat tgaaggcatg
3061 gcagaaaaaa ttgttttcta gttccaattc agtttcatgc agctagtaat ggtaatttgc
3121 cacaaggaag gcctatgtta gagaagagca actgctttct tgatctccag ggtctgtaac
3181 actaaaaagg acagcacatg ctcatcactt attagatgga gtcatcctgt taggttagaa
3241 ggtatacttc acaccatcct gggcattatg ctaagttgaa taccgtactt agtagaaata
3301 acagatgtca tgcatgctgt ggctgaatgt atcttcttcc ttgtttattt ggccattcag
3361 tcctgacatt gattcatgta tttattgagc ctgcattaaa tgccaagtga tatattagtt
3421 gctggggata cagtgatgaa caagcatgta tggctccccc tcatctctta cagtccagta
3481 gaaaaaacaa ataatgaaca agtaaacaag caaatgattg taaattggaa taagcactat
3541 gaaggaataa acggcatgct gtgtttggag ggagagaccc atagatgctc aaagatcata
3601 tctctgtaag atgacaattt aaattcaaaa ctgaagtatg gccgggcgca atggctcaca
3661 cccataatcc ctgcactttg ggaggccaag gtgggaggat cgcttgagct caggagttgg
3721 agccccacct gggcaacata gtgagaccat gtttccacga aaagtaaaaa aaacaaaaca
3781 aaacaaaaaa tagccagtag tcattctact ggggatacag aaaaaaaaaa aaaattagcc
3841 aggcgtgatg cctcacacct aaggtcccag ctactcagga ggctgaggca ggagaatcaa
3901 ttgagccccc aggaggttga ggctgcagtg agctgtgata gcaccactgc actccaccct
3961 ggtcaagaaa gcaagaccct gtctcaaaag aaaagaaaac aaaagaaaag aaaagaaaaa
4021 aaaaaaaaaa a
//