LOCUS BC060773 2814 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens SRY (sex determining region Y)-box 5, mRNA (cDNA clone
MGC:71528 IMAGE:30343519), complete cds.
ACCESSION BC060773
VERSION BC060773.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2814)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2814)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30061560.
FEATURES Location/Qualifiers
source 1..2814
/db_xref="H-InvDB:HIT000260075"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71528 IMAGE:30343519"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2814
/gene="SOX5"
/gene_synonym="L-SOX5"
/gene_synonym="MGC35153"
/db_xref="GeneID:6660"
/db_xref="MIM:604975"
CDS 451..2379
/gene="SOX5"
/gene_synonym="L-SOX5"
/gene_synonym="MGC35153"
/codon_start=1
/product="SOX5 protein"
/protein_id="AAH60773.1"
/db_xref="GeneID:6660"
/db_xref="MIM:604975"
/translation="MSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVS
FPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEE
GGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDW
KDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQI
EKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRT
LAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLA
AMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKEKTTLESLTQQLAVKQN
EEGKFSHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDER
RKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRP
KRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMP
SPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDD
PDVDYGSDSENHIAGQAN"
BASE COUNT 861 a 677 c 680 g 596 t
ORIGIN
1 gagagtgaaa aaggcgagcc accaaaaccc atctccagtc tcctcccggg ggcccccagc
61 ccgcctctgt gccactttgc atcccacgcc ggaggaggca ttaacgagac cgggtaaggc
121 tttttaaacg gtccaaggtg tagagccata cttcaggagg atcctcagaa gttttggaca
181 agcctcccca aatgtggcag gtgctgtgct ggccattggt gacccaaaga tgatgaaaaa
241 tatgttcctg cccacaagga gttagcgacc tactgggctt tcctcttgct gatgacatga
301 ttcctgtttg aatctgttga caagattctg aaagctgaac agagaattct ggcactgcac
361 tgggtaggaa aaagcatttc aagaaataga taatatcaag gacatcagga caccgggagt
421 gggagagatt ggactgggag actcagcagg atgtcttcca agcgaccagc ctctccgtat
481 ggggaagcag atggagaggt agccatggtg acaagcagac agaaagtgga agaagaggag
541 agtgacgggc tcccagcctt tcaccttccc ttgcatgtga gttttcccaa caagcctcac
601 tctgaggaat ttcagccagt ttctctgctg acgcaagaga cttgtggcca taggactccc
661 acttctcagc acaatacaat ggaagttgat ggcaataaag ttatgtcttc atttgcccca
721 cacaactcat ctacctcacc tcagaaggca gaagaaggtg ggcgacagag tggcgagtcc
781 ttgtctagta cagccctggg aactcctgaa cggcgcaagg gcagtttagc tgatgttgtt
841 gacaccttga agcagaggaa aatggaagag ctcatcaaaa acgagccgga agaaaccccc
901 agtattgaaa aactactctc aaaggactgg aaagacaagc ttcttgcaat gggatcgggg
961 aactttggcg aaataaaagg gactcccgag agcttagctg agaaagaaag gcaactcatg
1021 ggtatgatca accagctgac cagcctccga gagcagctgt tggctgccca cgatgagcag
1081 aagaaactag ctgcctctca gattgagaaa cagcgtcagc aaatggagct ggccaagcag
1141 caacaagaac aaattgcaag acagcagcag cagcttctac agcaacaaca caaaatcaat
1201 ttgctccagc aacagatcca ggttcaaggt cagctgccgc cattaatgat tcccgtattc
1261 cctcctgatc aacggacact ggctgcagct gcccagcaag gattcctcct ccctccaggc
1321 ttcagctata aggctggatg tagtgaccct taccctgttc agctgatccc aactaccatg
1381 gcagctgctg ccgcagcaac accaggctta ggcccactcc aactgcagca gttatatgct
1441 gcccagctag ctgcaatgca ggtatctcca ggagggaagc tgccaggcat accccaaggc
1501 aaccttggtg ctgctgtatc tcctaccagc attcacacag acaagagcac aaacagccca
1561 ccacccaaaa gcaaggaaaa aacaacactg gagagtctga ctcagcaact ggcagttaaa
1621 cagaatgaag aaggaaaatt tagccatgca atgatggatt tcaatctgag tggagattct
1681 gatggaagtg ctggagtctc agagtcaaga atttataggg aatcccgagg gcgtggtagc
1741 aatgaacccc acataaagcg tccaatgaat gccttcatgg tgtgggctaa agatgaacgg
1801 agaaagatcc ttcaagcctt tcctgacatg cacaactcca acatcagcaa gatattggga
1861 tctcgctgga aagctatgac aaacctagag aaacagccat attatgagga gcaagcccgt
1921 ctcagcaagc agcacctgga gaagtaccct gactataagt acaagcccag gccaaagcgc
1981 acctgcctgg tggatggcaa aaagctgcgc attggtgaat acaaggcaat catgcgcaac
2041 aggcggcagg aaatgcggca gtacttcaat gttgggcaac aagcacagat ccccattgcc
2101 actgctggtg ttgtgtaccc tggagccatc gccatggctg ggatgccctc ccctcacctg
2161 ccctcggagc actcaagcgt gtctagcagc ccagagcctg ggatgcctgt tatccagagc
2221 acttacggtg tgaaaggaga ggagccacat atcaaagaag agatacaggc cgaggacatc
2281 aatggagaaa tttatgatga gtacgacgag gaagaggatg atccagatgt agattatggg
2341 agtgacagtg aaaaccatat tgcaggacaa gccaactgat aagggtcaaa agattgttgt
2401 gaccttagga cttaaagaag ccctaactgg ttcatcctta ccagtggcca agcacattaa
2461 ctttctcata cactgactgt tactttaact gttagtctta aatagttggg acatcagctg
2521 actaatagac ctcagcctca aaaggcttgg aaagaaaaaa caaatacaac aagcaaacaa
2581 caatatcaac aacaagagat tgaaataagc tatgggtaaa ataatgccag taattcagct
2641 gctacatcca agcactgaag tcttacccgt caactttttt tttttttaaa taaactttat
2701 ggctgtttgt tctacaatgt tctagaaatt ctcactcagg tacacagtgc caacaagtgg
2761 cttgtgaatg tgttttgttg ttttgtgcta caatttttaa aaaaaaaaaa aaaa
//