LOCUS BC058905 1980 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ligatin, mRNA (cDNA clone MGC:64974 IMAGE:6067337), complete cds. ACCESSION BC058905 VERSION BC058905.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1980) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1980) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: k Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 56699484. FEATURES Location/Qualifiers source 1..1980 /db_xref="H-InvDB:HIT000259915" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:64974 IMAGE:6067337" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1980 /gene="LGTN" /gene_synonym="HCA56" /db_xref="GeneID:1939" /db_xref="HGNC:HGNC:6583" /db_xref="MIM:151625" CDS 75..1829 /gene="LGTN" /gene_synonym="HCA56" /codon_start=1 /product="ligatin" /protein_id="AAH58905.1" /db_xref="GeneID:1939" /db_xref="HGNC:HGNC:6583" /db_xref="MIM:151625" /translation="MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPG KEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLV LEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSG LKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHM TLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHAL KCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE LSKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMT LLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQH TVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVR NLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQL PRKHIQGLEKALKPGKKK" BASE COUNT 537 a 518 c 492 g 433 t ORIGIN 1 ggcagctgct gcgccctcgc tttcttgaca ttccctggct tctgtgctct cttccccagg 61 ccaccccagc agacatgttt gccaaggcct ttcgggtcaa gtccaacacg gccatcaagg 121 ggtcggacag gagaaagctt cgagctgatg tgacaactgc tttccccacc cttggaactg 181 atcaagtctc tgagttagta cctggaaagg aggagctcaa cattgtgaag ttgtatgctc 241 acaaagggga tgcagtgact gtgtacgtga gtggtggtaa ccccatcctc tttgaactgg 301 agaaaaatct gtatccaaca gtgtacacgc tgtggtccta tcctgatctt ctgccaacct 361 ttacaacatg gcctctggtg ctcgagaaac tggtaggggg agcagatttg atgctgcctg 421 gactggtgat gccccctgct ggtctgcctc aggtacagaa gggcgacctc tgtgccattt 481 ctttggtggg gaacagagcc cctgtagcca ttggagttgc agccatgtcc acagctgaga 541 tgctcacgtc aggcctgaag ggaaggggct tctctgtgct ccacacttac caggaccact 601 tgtggcggtc tggaaacaag tcctctccac cttccattgc tccactggcc ctggattcag 661 cagatctcag tgaagagaag gggtctgtcc agatggactc caccctgcag ggagacatga 721 ggcacatgac cctggagggg gaagaggaga atggggaggt tcaccaggca cgtgaagaca 781 agtctctctc agaagcccca gaagacacca gcaccagggg cctgaaccaa gactccacag 841 atagcaaaac gcttcaagaa caaatggatg agctgttaca gcaatgcttc ttacatgcct 901 tgaagtgccg agtcaaaaag gctgacctcc ctttactcac cagcactttc cttggcagcc 961 acatgttctc ctgctgcccc gaaggacgac aactggacat aaagaagtca agctacaaaa 1021 agctctctaa gttcctgcag caaatgcagc aggagcagat tatacaggtg aaggagctga 1081 gcaaaggggt ggagagcatt gtggctgtgg actggaaaca cccgaggatt acatctttcg 1141 tcatacccga gccctccccg acctcccaga ctatccagga gggtagcagg gaacagccct 1201 atcaccctcc agatataaaa cccctctact gtgtcccagc cagcatgacc ctgctcttcc 1261 aggagtctgg ccacaagaag gggagctttc tggagggcag tgaggtccga acgatcgtca 1321 ttaactacgc caagaaaaat gacctggttg atgcagacaa caaaaatctt gtgagattgg 1381 atcccatcct atgtgactgc atcttagaga aaaatgaaca gcatacagtc atgaagcttc 1441 catgggacag tcttctgacc aggtgtttgg aaaaattaca gcctgcctat caagtgaccc 1501 ttcccggaca agagcccatt gtgaagaaag ggagaatctg tccaattgac atcaccctag 1561 cacaaagagc gtctaataaa aaggtgaccg tggtccggaa cttggaggcc tatggtctgg 1621 acccatactc agtggctgcc atccttcagc agcgatgcca ggctagcacc accgtcaatc 1681 ctgcccctgg ggccaaggac agccttcagg tgcagatcca gggaaaccag gtccaccacc 1741 tcggctggct attgcttgaa gagtatcagc tccctcgaaa acacatccaa ggtctagaaa 1801 aggccctcaa acctggcaag aagaagtgac agactctttt gtctcacgtg gtggatccgg 1861 tggaaatcca agctctgggc tggtaatttt tatgagcatt ttcagctttt gcaaatacaa 1921 aatataattc tttacaaaaa taaattttta ttctaatcta aaaaaaaaaa aaaaaaaaaa //