LOCUS       BC058905                1980 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens ligatin, mRNA (cDNA clone MGC:64974 IMAGE:6067337),
            complete cds.
ACCESSION   BC058905
VERSION     BC058905.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1980)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 119 Row: k Column: 10
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 56699484.
FEATURES             Location/Qualifiers
     source          1..1980
                     /db_xref="H-InvDB:HIT000259915"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:64974 IMAGE:6067337"
                     /tissue_type="Testis, embryonal carcinoma"
                     /clone_lib="NIH_MGC_92"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1980
                     /gene="LGTN"
                     /gene_synonym="HCA56"
                     /db_xref="GeneID:1939"
                     /db_xref="HGNC:HGNC:6583"
                     /db_xref="MIM:151625"
     CDS             75..1829
                     /gene="LGTN"
                     /gene_synonym="HCA56"
                     /codon_start=1
                     /product="ligatin"
                     /protein_id="AAH58905.1"
                     /db_xref="GeneID:1939"
                     /db_xref="HGNC:HGNC:6583"
                     /db_xref="MIM:151625"
                     /translation="MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPG
                     KEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLV
                     LEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSG
                     LKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHM
                     TLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHAL
                     KCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE
                     LSKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMT
                     LLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQH
                     TVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVR
                     NLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQL
                     PRKHIQGLEKALKPGKKK"
BASE COUNT          537 a          518 c          492 g          433 t
ORIGIN      
        1 ggcagctgct gcgccctcgc tttcttgaca ttccctggct tctgtgctct cttccccagg
       61 ccaccccagc agacatgttt gccaaggcct ttcgggtcaa gtccaacacg gccatcaagg
      121 ggtcggacag gagaaagctt cgagctgatg tgacaactgc tttccccacc cttggaactg
      181 atcaagtctc tgagttagta cctggaaagg aggagctcaa cattgtgaag ttgtatgctc
      241 acaaagggga tgcagtgact gtgtacgtga gtggtggtaa ccccatcctc tttgaactgg
      301 agaaaaatct gtatccaaca gtgtacacgc tgtggtccta tcctgatctt ctgccaacct
      361 ttacaacatg gcctctggtg ctcgagaaac tggtaggggg agcagatttg atgctgcctg
      421 gactggtgat gccccctgct ggtctgcctc aggtacagaa gggcgacctc tgtgccattt
      481 ctttggtggg gaacagagcc cctgtagcca ttggagttgc agccatgtcc acagctgaga
      541 tgctcacgtc aggcctgaag ggaaggggct tctctgtgct ccacacttac caggaccact
      601 tgtggcggtc tggaaacaag tcctctccac cttccattgc tccactggcc ctggattcag
      661 cagatctcag tgaagagaag gggtctgtcc agatggactc caccctgcag ggagacatga
      721 ggcacatgac cctggagggg gaagaggaga atggggaggt tcaccaggca cgtgaagaca
      781 agtctctctc agaagcccca gaagacacca gcaccagggg cctgaaccaa gactccacag
      841 atagcaaaac gcttcaagaa caaatggatg agctgttaca gcaatgcttc ttacatgcct
      901 tgaagtgccg agtcaaaaag gctgacctcc ctttactcac cagcactttc cttggcagcc
      961 acatgttctc ctgctgcccc gaaggacgac aactggacat aaagaagtca agctacaaaa
     1021 agctctctaa gttcctgcag caaatgcagc aggagcagat tatacaggtg aaggagctga
     1081 gcaaaggggt ggagagcatt gtggctgtgg actggaaaca cccgaggatt acatctttcg
     1141 tcatacccga gccctccccg acctcccaga ctatccagga gggtagcagg gaacagccct
     1201 atcaccctcc agatataaaa cccctctact gtgtcccagc cagcatgacc ctgctcttcc
     1261 aggagtctgg ccacaagaag gggagctttc tggagggcag tgaggtccga acgatcgtca
     1321 ttaactacgc caagaaaaat gacctggttg atgcagacaa caaaaatctt gtgagattgg
     1381 atcccatcct atgtgactgc atcttagaga aaaatgaaca gcatacagtc atgaagcttc
     1441 catgggacag tcttctgacc aggtgtttgg aaaaattaca gcctgcctat caagtgaccc
     1501 ttcccggaca agagcccatt gtgaagaaag ggagaatctg tccaattgac atcaccctag
     1561 cacaaagagc gtctaataaa aaggtgaccg tggtccggaa cttggaggcc tatggtctgg
     1621 acccatactc agtggctgcc atccttcagc agcgatgcca ggctagcacc accgtcaatc
     1681 ctgcccctgg ggccaaggac agccttcagg tgcagatcca gggaaaccag gtccaccacc
     1741 tcggctggct attgcttgaa gagtatcagc tccctcgaaa acacatccaa ggtctagaaa
     1801 aggccctcaa acctggcaag aagaagtgac agactctttt gtctcacgtg gtggatccgg
     1861 tggaaatcca agctctgggc tggtaatttt tatgagcatt ttcagctttt gcaaatacaa
     1921 aatataattc tttacaaaaa taaattttta ttctaatcta aaaaaaaaaa aaaaaaaaaa
//